diff --git a/src/singularity_modules/BEDtools/2.25.0/build.sh b/src/singularity_modules/BEDtools/2.25.0/build.sh index 668a40c6a89620ba8bcd6e89b367b637d7309d2d..f72bd65650d353e9994fa652cd917da032ac51f6 100755 --- a/src/singularity_modules/BEDtools/2.25.0/build.sh +++ b/src/singularity_modules/BEDtools/2.25.0/build.sh @@ -1,2 +1,3 @@ #/bin/sh sudo singularity build --force bin/bedtools:2.25.0.sif src/singularity_modules/BEDtools/2.25.0/BEDtools.def +singularity sign bin/bedtools:2.25.0.sif diff --git a/src/singularity_modules/BWA/0.7.17/build.sh b/src/singularity_modules/BWA/0.7.17/build.sh index 340a8c219741a03182c5832ec78f92f0da3b652a..26b75effd1481f35a21642e90e7e0f99a11d09fd 100755 --- a/src/singularity_modules/BWA/0.7.17/build.sh +++ b/src/singularity_modules/BWA/0.7.17/build.sh @@ -1,2 +1,3 @@ #/bin/sh sudo singularity build --force bin/bwa:0.7.17.sif src/singularity_modules/BWA/0.7.17/BWA.def +singularity sign bin/bwa:0.7.17.sif diff --git a/src/singularity_modules/Bowtie/1.2.2/Bowtie.def b/src/singularity_modules/Bowtie/1.2.2/Bowtie.def new file mode 100644 index 0000000000000000000000000000000000000000..79da11614f57813f69f3ac863606e2c5fa69efc8 --- /dev/null +++ b/src/singularity_modules/Bowtie/1.2.2/Bowtie.def @@ -0,0 +1,22 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +BOWTIE_VERSION=1.2.2 +SAMTOOLS_VERSION=1.7 +PACKAGES="bowtie=${BOWTIE_VERSION}* \ +samtools=${SAMTOOLS_VERSION}*" + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +%environment +export BOWTIE_VERSION=1.2.2 +export SAMTOOLS_VERSION=1.7 + +%runscript +exec /bin/bash "$@" diff --git a/src/singularity_modules/Bowtie/1.2.2/build.sh b/src/singularity_modules/Bowtie/1.2.2/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..2c7a0e6c8b1341d03d789db07363f10a4d08c530 --- /dev/null +++ b/src/singularity_modules/Bowtie/1.2.2/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/Bowtie/1.2.2/Bowtie.def +singularity sign bin/bowtie:1.2.2.sif diff --git a/src/singularity_modules/UrQt/d62c1f8/build.sh b/src/singularity_modules/UrQt/d62c1f8/build.sh index 69aeab4b765864e976ff773394c2d564117fbb2c..e003afadec5d6f75d9fb8e508c743875c7af4cff 100755 --- a/src/singularity_modules/UrQt/d62c1f8/build.sh +++ b/src/singularity_modules/UrQt/d62c1f8/build.sh @@ -1,2 +1,3 @@ #/bin/sh sudo singularity build --force bin/UrQt:d62c1f8.sif src/singularity_modules/UrQt/d62c1f8/UrQt.def +singularity sign bin/UrQt:d62c1f8.sif diff --git a/src/singularity_modules/sambamba/0.6.7/build.sh b/src/singularity_modules/sambamba/0.6.7/build.sh index 7afad494b2e479a8a1f2fc297d81ad47b7c39e0e..809fc3710df07fe95755cd544e342137d0297ba5 100755 --- a/src/singularity_modules/sambamba/0.6.7/build.sh +++ b/src/singularity_modules/sambamba/0.6.7/build.sh @@ -1,2 +1,3 @@ #/bin/sh sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def +singularity sign bin/sambamba:0.6.7.sif