diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config index 13dfac50e21eb2b7a6bfbbd2cbad8bbceb6655cc..ed42799d9cc1e9a8d3c532a61f3918d3c727cfbd 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_paired.config +++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -14,7 +14,7 @@ profiles { singularity.cacheDir = "./bin/" process { withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -23,7 +23,7 @@ profiles { process{ withName: adaptor_removal { beforeScript = "source $baseDir/.conda_psmn.sh" - conda = "$baseDir/.conda_envs/cutadapt_2.1" + conda = "$baseDir/.conda_envs/cutadapt_2.4" executor = "sge" clusterOptions = "-cwd -V" cpus = 1 @@ -39,7 +39,7 @@ profiles { singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" scratch = true stageInMode = "copy" stageOutMode = "rsync" diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config index 13dfac50e21eb2b7a6bfbbd2cbad8bbceb6655cc..ed42799d9cc1e9a8d3c532a61f3918d3c727cfbd 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_single.config +++ b/src/nf_modules/cutadapt/adaptor_removal_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -14,7 +14,7 @@ profiles { singularity.cacheDir = "./bin/" process { withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -23,7 +23,7 @@ profiles { process{ withName: adaptor_removal { beforeScript = "source $baseDir/.conda_psmn.sh" - conda = "$baseDir/.conda_envs/cutadapt_2.1" + conda = "$baseDir/.conda_envs/cutadapt_2.4" executor = "sge" clusterOptions = "-cwd -V" cpus = 1 @@ -39,7 +39,7 @@ profiles { singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: adaptor_removal { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" scratch = true stageInMode = "copy" stageOutMode = "rsync" diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config index 222663bc4cf84889c3ee183930271cd4687f0ab2..8c158c0e72a5927b67cf1a4c106f7e22555e1cba 100644 --- a/src/nf_modules/cutadapt/trimming_paired.config +++ b/src/nf_modules/cutadapt/trimming_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -14,7 +14,7 @@ profiles { singularity.cacheDir = "./bin/" process { withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -23,7 +23,7 @@ profiles { process{ withName: trimming { beforeScript = "source $baseDir/.conda_psmn.sh" - conda = "$baseDir/.conda_envs/cutadapt_2.1" + conda = "$baseDir/.conda_envs/cutadapt_2.4" executor = "sge" clusterOptions = "-cwd -V" cpus = 1 @@ -39,7 +39,7 @@ profiles { singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" scratch = true stageInMode = "copy" stageOutMode = "rsync" diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config index 222663bc4cf84889c3ee183930271cd4687f0ab2..8c158c0e72a5927b67cf1a4c106f7e22555e1cba 100644 --- a/src/nf_modules/cutadapt/trimming_single.config +++ b/src/nf_modules/cutadapt/trimming_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -14,7 +14,7 @@ profiles { singularity.cacheDir = "./bin/" process { withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" cpus = 1 } } @@ -23,7 +23,7 @@ profiles { process{ withName: trimming { beforeScript = "source $baseDir/.conda_psmn.sh" - conda = "$baseDir/.conda_envs/cutadapt_2.1" + conda = "$baseDir/.conda_envs/cutadapt_2.4" executor = "sge" clusterOptions = "-cwd -V" cpus = 1 @@ -39,7 +39,7 @@ profiles { singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: trimming { - container = "lbmc/cutadapt:2.1" + container = "lbmc/cutadapt:2.4" scratch = true stageInMode = "copy" stageOutMode = "rsync"