diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index 97d90b27811e948b91c34ddce9947d6880064e68..fe08a0df8093a34ef4eb5026a85bee6d6db60ac1 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -185,6 +185,7 @@ process kb_marseq { tuple val(file_id), path("*_report.txt"), emit: report script: + memory = "${task.memory}" - ~/\s*GB/ if (file_id instanceof List){ file_prefix = file_id[0] } else { @@ -199,7 +200,7 @@ process kb_marseq { """ mkdir ${file_prefix} kb count -t ${task.cpus} \ - -m ${task.memory} \ + -m ${memory} \ -i ${index} \ -g ${transcript_to_gene} \ ${whitelist_param} \