From 2555926ab18882444162419b234dc9848ae41346 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 5 Oct 2018 23:24:01 +0200
Subject: [PATCH] SNP_calling.nf: change cpus number for bowtie
---
src/SNP_calling.nf | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/SNP_calling.nf b/src/SNP_calling.nf
index 514d83db..cdc2782d 100644
--- a/src/SNP_calling.nf
+++ b/src/SNP_calling.nf
@@ -87,11 +87,11 @@ filter_fasta_files.into{
process index_fasta {
tag "$file_id"
- cpus 4
+ cpus 12
publishDir "results/mapping/index/", mode: 'copy'
input:
- set fasta_id, file(fasta) from filtered_fasta_files
+ set file_id, file(fasta) from filtered_fasta_files
output:
file "*.index*" into index_files
@@ -109,8 +109,8 @@ fi
process mapping_fastq {
tag "$pair_id"
- cpus 4
- publishDir "results/mapping/bams/", mode: 'copy'
+ cpus 12
+ publishDir "results/mapping/bam/", mode: 'copy'
input:
set pair_id, file(reads) from fastq_files_trim
--
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