From 23755281eeba0825bb065546bb5f6796247b9d09 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 15 Feb 2021 17:26:33 +0100
Subject: [PATCH] typo in gatk3 to DSL2
---
src/nf_modules/gatk3/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/gatk3/main.nf b/src/nf_modules/gatk3/main.nf
index 67e59b90..5de8637c 100644
--- a/src/nf_modules/gatk3/main.nf
+++ b/src/nf_modules/gatk3/main.nf
@@ -88,9 +88,9 @@ gatk3 -T VariantFiltration \
"""
}
-high_confidence_indel_filter = "QD < 2.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0"
+high_confidence_indel_filter = "QD < 3.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0"
-process high_confidence_indel {
+process high_confidence_indels {
container = "${container_url}"
label "big_mem_mono_cpus"
tag "$file_id"
--
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