diff --git a/src/nf_modules/gatk3/main.nf b/src/nf_modules/gatk3/main.nf index 67e59b90a73df92470f0eeac39cb0a5c7c4cad48..5de8637c86048cadced5b751bc02be2b43473c0f 100644 --- a/src/nf_modules/gatk3/main.nf +++ b/src/nf_modules/gatk3/main.nf @@ -88,9 +88,9 @@ gatk3 -T VariantFiltration \ """ } -high_confidence_indel_filter = "QD < 2.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0" +high_confidence_indel_filter = "QD < 3.0 || FS > 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0" -process high_confidence_indel { +process high_confidence_indels { container = "${container_url}" label "big_mem_mono_cpus" tag "$file_id"