From 216457b0553cbe2c694f4b414ec57a66cceb6bee Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 Mar 2021 16:40:08 +0100
Subject: [PATCH] g2gtools: capture stdout sent to stderr
---
src/nf_modules/g2gtools/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/g2gtools/main.nf b/src/nf_modules/g2gtools/main.nf
index b708a448..20cf410a 100644
--- a/src/nf_modules/g2gtools/main.nf
+++ b/src/nf_modules/g2gtools/main.nf
@@ -18,7 +18,7 @@ g2gtools vcf2vci \
-f ${fasta} \
-i ${vcf} \
-s ${file_id.library} \
- -o ${file_id.id}.vci.gz
+ -o ${file_id.id}.vci.gz > ${file_id.id}
"""
}
--
GitLab