From 206b5fa668c4366c98c331186e39ca649ca18ca4 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 5 Jun 2018 17:06:34 +0200 Subject: [PATCH] TP.md: add sge_module section --- doc/TP_experimental_biologists.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/doc/TP_experimental_biologists.md b/doc/TP_experimental_biologists.md index ebf32d75..2156da17 100644 --- a/doc/TP_experimental_biologists.md +++ b/doc/TP_experimental_biologists.md @@ -81,6 +81,19 @@ By running this script you will be able to easily install tools in different ver - You don't have to bother with detious installation procedure, somebody else already did the job and wrote a `Dockerfile`. - You can easly keep [container](https://www.docker.com/what-container) for differents version of the sam tools. +### `sge_modules` + +The `src/sge_modules` folder is not realy there. It's a submodule of the project [PSMN/modules](https://gitlab.biologie.ens-lyon.fr/PSMN/modules). To populate it locally you can use the following command: + +```sh +git submodule init +``` + +Like for the `src/docker_modules` the [PSMN/modules](https://gitlab.biologie.ens-lyon.fr/PSMN/modules) project describe recepies to install tools and use them. The main difference is that you cannot use [Docker](https://www.docker.com/what-docker) on the PSMN. Instead you have to use another framework [Environement Module](http://www.ens-lyon.fr/PSMN/doku.php?id=documentation:tools:modules) which allows you to load modules for specific tools and version. +The [README.md](https://gitlab.biologie.ens-lyon.fr/PSMN/modules/blob/master/README.md) file of the [PSMN/modules](https://gitlab.biologie.ens-lyon.fr/PSMN/modules) respository contains all the instruction to be able to load the modules maintained by the LBMC en present in the [PSMN/modules](https://gitlab.biologie.ens-lyon.fr/PSMN/modules) respository. + + + -- GitLab