diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf index 208540dda8796d60d50415c28b964e06314e99f3..4d5c931391f2d43e3f28cb2134baba34d42981a3 100644 --- a/src/nf_modules/samtools/main.nf +++ b/src/nf_modules/samtools/main.nf @@ -174,9 +174,9 @@ process split_bam { tuple val(file_id), path("*_reverse.bam*"), emit: bam_reverse script: """ -samtools view --@ ${Math.round(task.cpus/2)} ${params.split_bam} \ +samtools view -@ ${Math.round(task.cpus/2)} ${params.split_bam} \ -hb -F 0x10 ${bam} > ${bam.simpleName}_forward.bam & -samtools view --@ ${Math.round(task.cpus/2)} ${params.split_bam} \ +samtools view -@ ${Math.round(task.cpus/2)} ${params.split_bam} \ -hb -f 0x10 ${bam} > ${bam.simpleName}_reverse.bam """ }