From 1ee9f13ed538e7c8a316bb8cc3b548bee79ccfe4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Wed, 25 Mar 2020 15:16:30 +0100
Subject: [PATCH] conda_packages.sh: add bwa 0.7.17
---
src/.conda_packages.sh | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/.conda_packages.sh b/src/.conda_packages.sh
index 909ca4cb..86b2575c 100644
--- a/src/.conda_packages.sh
+++ b/src/.conda_packages.sh
@@ -45,6 +45,9 @@ fi
if [ ! -d ${CONDA_ENVS}bowtie2_2.3.4.1 ]; then
conda create --yes --name bowtie2_2.3.4.1 bowtie2=2.3.4.1 samtools=1.7 #&& \
fi
+if [ ! -d ${CONDA_ENVS}bwa_0.7.17 ]; then
+ conda create --yes --name bwa_0.7.17 -c bioconda bwa=0.7.17
+fi
if [ ! -d ${CONDA_ENVS}sra-tools_2.8.2 ]; then
conda create --yes --name sra-tools_2.8.2 sra-tools=2.8.2
fi
--
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