From 1bba0da1c746597b62266cccb0c83b4c90936726 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 1 Mar 2019 15:56:44 +0100
Subject: [PATCH] UrQt: update singularity path
---
src/nf_modules/UrQt/trimming_paired.config | 2 +-
src/nf_modules/UrQt/trimming_single.config | 2 +-
src/singularity_modules/UrQt/d62c1f8/build.sh | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/UrQt/trimming_paired.config b/src/nf_modules/UrQt/trimming_paired.config
index de46593c..fb4ffb93 100644
--- a/src/nf_modules/UrQt/trimming_paired.config
+++ b/src/nf_modules/UrQt/trimming_paired.config
@@ -14,7 +14,7 @@ profiles {
process {
withName: trimming {
cpus = 4
- container = "file:///bin/UrQt:d62c1f8.sif"
+ container = "file://bin/UrQt:d62c1f8.sif"
}
}
}
diff --git a/src/nf_modules/UrQt/trimming_single.config b/src/nf_modules/UrQt/trimming_single.config
index 0324bb8b..32802a07 100644
--- a/src/nf_modules/UrQt/trimming_single.config
+++ b/src/nf_modules/UrQt/trimming_single.config
@@ -13,7 +13,7 @@ profiles {
singularity.enabled = true
process {
withName: trimming {
- container = "file:///bin/UrQt:d62c1f8.sif"
+ container = "file://bin/UrQt:d62c1f8.sif"
cpus = 4
}
}
diff --git a/src/singularity_modules/UrQt/d62c1f8/build.sh b/src/singularity_modules/UrQt/d62c1f8/build.sh
index cfdf4aa1..69aeab4b 100755
--- a/src/singularity_modules/UrQt/d62c1f8/build.sh
+++ b/src/singularity_modules/UrQt/d62c1f8/build.sh
@@ -1,2 +1,2 @@
#/bin/sh
-sudo singularity build --force /bin/UrQt:d62c1f8.sif src/singularity_modules/UrQt/d62c1f8/UrQt.def
+sudo singularity build --force bin/UrQt:d62c1f8.sif src/singularity_modules/UrQt/d62c1f8/UrQt.def
--
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