diff --git a/src/nf_modules/MultiQC/multiqc_paired.config b/src/nf_modules/MultiQC/multiqc_paired.config index d43e99bacfc159987feaee082c397ed559af5b23..3b55ccc1a04b5073df6464267419c1d775610963 100644 --- a/src/nf_modules/MultiQC/multiqc_paired.config +++ b/src/nf_modules/MultiQC/multiqc_paired.config @@ -1,3 +1,4 @@ + profiles { docker { docker.temp = 'auto' @@ -14,7 +15,8 @@ profiles { psmn { process{ withname: fastqc_fastq { - beforeScript = "module purge; module load FastQC/0.11.5" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "FastQC/0.11.5" executor = "psmn" cpus = 1 memory = "5GB" @@ -24,7 +26,8 @@ profiles { queue = 'monointeldeb128' } withname: multiqc { - beforeScript = "module purge; module load FastQC/1.0" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "MultiQC/1.0" executor = "psmn" cpus = 1 memory = "5GB" @@ -36,3 +39,4 @@ profiles { } } } + diff --git a/src/nf_modules/MultiQC/multiqc_single.config b/src/nf_modules/MultiQC/multiqc_single.config index d43e99bacfc159987feaee082c397ed559af5b23..eff032025a72ff713c4b41e9217b205cd4eac7a0 100644 --- a/src/nf_modules/MultiQC/multiqc_single.config +++ b/src/nf_modules/MultiQC/multiqc_single.config @@ -14,7 +14,8 @@ profiles { psmn { process{ withname: fastqc_fastq { - beforeScript = "module purge; module load FastQC/0.11.5" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "FastQC/0.11.5" executor = "psmn" cpus = 1 memory = "5GB" @@ -24,7 +25,8 @@ profiles { queue = 'monointeldeb128' } withname: multiqc { - beforeScript = "module purge; module load FastQC/1.0" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "MultiQC/1.0" executor = "psmn" cpus = 1 memory = "5GB"