diff --git a/README.md b/README.md index 6f07ab7b151808aa7ddc91c0d7a55e54e1741d4c..d7871d5d4bd464b91e04c482bb1dd1ef54fe48e1 100644 --- a/README.md +++ b/README.md @@ -76,6 +76,31 @@ for example to run the tests on `Bowtie2` run: src/nf_modules/Bowtie2/tests/tests.sh ``` +## Available tools + +- BEDtools nf: ok / docker: ok / sge: ok +- Bowtie2 nf: ok / docker: ok / sge: ok +- FastQC nf: no / docker: ok / sge: ok +- HISAT2 nf: no / docker: ok / sge: ok +- HTSeq nf: ok / docker: ok / sge: ok +- Kallisto nf: ok / docker: ok / sge: ok +- MultiQC nf: no / docker: ok / sge: ok +- RSEM nf: ok / docker: ok / sge: ok +- SAMtools nf: ok / docker: ok / sge: ok +- SRAtoolkit nf: no / docker: ok / sge: ok +- Salmon nf: no / docker: ok / sge: ok +- TopHat nf: no / docker: ok / sge: ok +- Trimmomatic nf: no / docker: ok / sge: ok +- UrQt nf: ok / docker: ok / sge: ok +- canu nf: ok / docker: ok / sge: ok +- cutadapt nf: ok / docker: ok / sge: ok +- deepTools nf: no / docker: ok / sge: ok +- file_handle nf: no / docker: ok / sge: ok +- pigz nf: no / docker: ok / sge: ok +- sra-tools nf: ok / docker: no / sge: no + + + ## Contributing Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.