From 172c6ed93d1dca214fd420f8e8daf8fc790bedf1 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 21 Apr 2020 14:02:52 +0200
Subject: [PATCH] docker: add kallistobustools container
---
src/.docker_modules/kallistobustools/0.24.4/Dockerfile | 9 +++++++++
.../kallistobustools/0.24.4/docker_init.sh | 4 ++++
2 files changed, 13 insertions(+)
create mode 100644 src/.docker_modules/kallistobustools/0.24.4/Dockerfile
create mode 100755 src/.docker_modules/kallistobustools/0.24.4/docker_init.sh
diff --git a/src/.docker_modules/kallistobustools/0.24.4/Dockerfile b/src/.docker_modules/kallistobustools/0.24.4/Dockerfile
new file mode 100644
index 00000000..b3bb5355
--- /dev/null
+++ b/src/.docker_modules/kallistobustools/0.24.4/Dockerfile
@@ -0,0 +1,9 @@
+FROM python:3.7
+MAINTAINER Laurent Modolo
+
+ENV KB_VERSION=0.24.4
+
+RUN pip3 install kb_python==${KB_VERSION}
+ENTRYPOINT ["/bin/sh"]
+RUN ln -s /usr/local/lib/python3.7/site-packages/kb_python/bins/linux/bustools/bustools /usr/local/bin/
+RUN ln -s /usr/local/lib/python3.7/site-packages/kb_python/bins/linux/kallisto/kallisto /usr/local/bin/
diff --git a/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh b/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh
new file mode 100755
index 00000000..216b302f
--- /dev/null
+++ b/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+docker pull lbmc/kallistobustools:0.24.4
+docker build src/.docker_modules/kallistobustools/0.24.4 -t 'lbmc/kallistobustools:0.24.4'
+docker push lbmc/kallistobustools:0.24.4
--
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