From 05e1de4c7dac0d4d8e1f658a9dcdf5d4622feaf1 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 13 Dec 2019 17:14:36 +0100
Subject: [PATCH] fasta_from_bed.config: remove ${CONDA_ENVS}
---
src/nf_modules/bedtools/fasta_from_bed.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/bedtools/fasta_from_bed.config b/src/nf_modules/bedtools/fasta_from_bed.config
index 93e49c41..7a3302d7 100644
--- a/src/nf_modules/bedtools/fasta_from_bed.config
+++ b/src/nf_modules/bedtools/fasta_from_bed.config
@@ -23,7 +23,7 @@ profiles {
process{
withName: fasta_from_bed {
beforeScript = "source $baseDir/.conda_psmn.sh"
- conda = "$baseDir/.conda_envs/${CONDA_ENVS}bedtools_2.25.0"
+ conda = "$baseDir/.conda_envs/bedtools_2.25.0"
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 1
--
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