diff --git a/src/nf_modules/BEDtools/fasta_from_bed.config b/src/nf_modules/BEDtools/fasta_from_bed.config
index a297b911dd7e7d9fbe44ea85df4a9138ee2d7f43..72c988999bbabe64053a026f593939a21a62d1f7 100644
--- a/src/nf_modules/BEDtools/fasta_from_bed.config
+++ b/src/nf_modules/BEDtools/fasta_from_bed.config
@@ -15,7 +15,6 @@ profiles {
module = "BEDtools/2.25.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/BWA/indexing.config b/src/nf_modules/BWA/indexing.config
index 6aaed59d42aaaf521549f6006654eaab38e29286..acc8e53965a06dd94f2e7d99cad7af6297a24b5a 100644
--- a/src/nf_modules/BWA/indexing.config
+++ b/src/nf_modules/BWA/indexing.config
@@ -15,7 +15,6 @@ profiles {
module = "BWA/0.7.17"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "30GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/BWA/mapping_paired.config b/src/nf_modules/BWA/mapping_paired.config
index 141819be1ab8dbab7df3109b50bf418782f19cb7..808e12a66c16ebe1dc3a417a0e1970cdb7719598 100644
--- a/src/nf_modules/BWA/mapping_paired.config
+++ b/src/nf_modules/BWA/mapping_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "BWA/0.7.17"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Bowtie/indexing.config b/src/nf_modules/Bowtie/indexing.config
index f52e36ad55ff489a427deaa176247009e891adf6..a1b6addd32b7f2b1aaec792d11284879c9095e4c 100644
--- a/src/nf_modules/Bowtie/indexing.config
+++ b/src/nf_modules/Bowtie/indexing.config
@@ -15,7 +15,6 @@ profiles {
module = "Bowtie/1.2.2"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/Bowtie/mapping_paired.config b/src/nf_modules/Bowtie/mapping_paired.config
index 4b87972b64606ad1b0ced95af86cfa875299b370..9d661f3fe01b9169d447644d2a0508764e7edf61 100644
--- a/src/nf_modules/Bowtie/mapping_paired.config
+++ b/src/nf_modules/Bowtie/mapping_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "Bowtie/1.2.2:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Bowtie/mapping_single.config b/src/nf_modules/Bowtie/mapping_single.config
index 4b87972b64606ad1b0ced95af86cfa875299b370..9d661f3fe01b9169d447644d2a0508764e7edf61 100644
--- a/src/nf_modules/Bowtie/mapping_single.config
+++ b/src/nf_modules/Bowtie/mapping_single.config
@@ -15,7 +15,6 @@ profiles {
module = "Bowtie/1.2.2:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Bowtie2/indexing.config b/src/nf_modules/Bowtie2/indexing.config
index 8db956f33778c42b89287dd5b9e28a61fd01afad..82ebc902dd50c724072a774024d7f5e0eaa8a32c 100644
--- a/src/nf_modules/Bowtie2/indexing.config
+++ b/src/nf_modules/Bowtie2/indexing.config
@@ -15,11 +15,9 @@ profiles {
module = "Bowtie2/2.3.4.1"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
- memory = "30GB"
- time = "24h"
- queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
- penv = 'openmp16'
+ memory = "20GB"
+ time = "12h"
+ queue = 'monointeldeb128'
}
}
}
diff --git a/src/nf_modules/Bowtie2/mapping_paired.config b/src/nf_modules/Bowtie2/mapping_paired.config
index 05836c43403faf4c6fc5f412310b607a25a501bc..8fe161a0f7eee81dd2ec8e19926078ca52c161f0 100644
--- a/src/nf_modules/Bowtie2/mapping_paired.config
+++ b/src/nf_modules/Bowtie2/mapping_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "Bowtie2/2.3.4.1:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Bowtie2/mapping_single.config b/src/nf_modules/Bowtie2/mapping_single.config
index 05836c43403faf4c6fc5f412310b607a25a501bc..8fe161a0f7eee81dd2ec8e19926078ca52c161f0 100644
--- a/src/nf_modules/Bowtie2/mapping_single.config
+++ b/src/nf_modules/Bowtie2/mapping_single.config
@@ -15,7 +15,6 @@ profiles {
module = "Bowtie2/2.3.4.1:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/FastQC/fastqc_paired.config b/src/nf_modules/FastQC/fastqc_paired.config
index 7d37077bd205e75d6df6da9e7e6e28d0dc3cfdda..b16c5d07c5647284cf8f36184f7f527e0e0af94b 100644
--- a/src/nf_modules/FastQC/fastqc_paired.config
+++ b/src/nf_modules/FastQC/fastqc_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "FastQC/0.11.5"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/FastQC/fastqc_single.config b/src/nf_modules/FastQC/fastqc_single.config
index 7d37077bd205e75d6df6da9e7e6e28d0dc3cfdda..b16c5d07c5647284cf8f36184f7f527e0e0af94b 100644
--- a/src/nf_modules/FastQC/fastqc_single.config
+++ b/src/nf_modules/FastQC/fastqc_single.config
@@ -15,7 +15,6 @@ profiles {
module = "FastQC/0.11.5"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/HTSeq/htseq.config b/src/nf_modules/HTSeq/htseq.config
index 49dc99b06afc62ab8f07c62b471a856a53f8b908..95919f56151da4bda93cb7ec5138a38dc6c34c27 100644
--- a/src/nf_modules/HTSeq/htseq.config
+++ b/src/nf_modules/HTSeq/htseq.config
@@ -18,7 +18,6 @@ profiles {
module = "SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -28,7 +27,6 @@ profiles {
module = "HTSeq/0.8.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/Kallisto/indexing.config b/src/nf_modules/Kallisto/indexing.config
index 84fe98039085b06a34c9138f70d4656e3d415fe1..c52f9b5111aa45727e2b8f3d49a2738aadc06233 100644
--- a/src/nf_modules/Kallisto/indexing.config
+++ b/src/nf_modules/Kallisto/indexing.config
@@ -15,7 +15,6 @@ profiles {
module = "Kallisto/0.44.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Kallisto/mapping_paired.config b/src/nf_modules/Kallisto/mapping_paired.config
index b7c2ff41346e14188b06dd977956ca9a3f9064fa..2274d13dab4c777b2c25f50617d92f8aeb606379 100644
--- a/src/nf_modules/Kallisto/mapping_paired.config
+++ b/src/nf_modules/Kallisto/mapping_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "Kallisto/0.44.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/Kallisto/mapping_single.config b/src/nf_modules/Kallisto/mapping_single.config
index b7c2ff41346e14188b06dd977956ca9a3f9064fa..2274d13dab4c777b2c25f50617d92f8aeb606379 100644
--- a/src/nf_modules/Kallisto/mapping_single.config
+++ b/src/nf_modules/Kallisto/mapping_single.config
@@ -15,7 +15,6 @@ profiles {
module = "Kallisto/0.44.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/MUSIC/peak_calling_single.config b/src/nf_modules/MUSIC/peak_calling_single.config
index ee43a0510d31e1ac9bf2610801c02b16a58268ed..f8ad13e20a1ff1b58914dc982b636fcde9825922 100644
--- a/src/nf_modules/MUSIC/peak_calling_single.config
+++ b/src/nf_modules/MUSIC/peak_calling_single.config
@@ -21,7 +21,6 @@ profiles {
module = "MUSIC/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -31,7 +30,6 @@ profiles {
module = "MUSIC/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -41,7 +39,6 @@ profiles {
module = "MUSIC/6613c53"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/MultiQC/multiqc_paired.config b/src/nf_modules/MultiQC/multiqc_paired.config
index fff1d7be12d557b75a3b7c92db3df6f21c896342..d986c1f04e9da521be57b31ece221375cb649db7 100644
--- a/src/nf_modules/MultiQC/multiqc_paired.config
+++ b/src/nf_modules/MultiQC/multiqc_paired.config
@@ -19,7 +19,6 @@ profiles {
module = "FastQC/0.11.5"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
@@ -31,7 +30,6 @@ profiles {
module = "MultiQC/1.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
diff --git a/src/nf_modules/MultiQC/multiqc_single.config b/src/nf_modules/MultiQC/multiqc_single.config
index abc81de42e196a6b9e8842b193593723679942a8..a6a2948abb303672c4f76d895cf0e383723e745c 100644
--- a/src/nf_modules/MultiQC/multiqc_single.config
+++ b/src/nf_modules/MultiQC/multiqc_single.config
@@ -18,7 +18,6 @@ profiles {
module = "FastQC/0.11.5"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
@@ -30,7 +29,6 @@ profiles {
module = "MultiQC/1.0"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
diff --git a/src/nf_modules/RSEM/indexing.config b/src/nf_modules/RSEM/indexing.config
index 3114ab319bffb3354e49c1780b6e862b97a8b8b9..d6d0a9086f0e7da710efa8eddc4069bed07bd9f2 100644
--- a/src/nf_modules/RSEM/indexing.config
+++ b/src/nf_modules/RSEM/indexing.config
@@ -15,7 +15,6 @@ profiles {
module = "RSEM/1.3.0:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/RSEM/quantification_paired.config b/src/nf_modules/RSEM/quantification_paired.config
index 86386ae04ac21d928c71b716181af373012ee176..0801e388291866630253a09a3eb4519feec87498 100644
--- a/src/nf_modules/RSEM/quantification_paired.config
+++ b/src/nf_modules/RSEM/quantification_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "RSEM/1.3.0:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/RSEM/quantification_single.config b/src/nf_modules/RSEM/quantification_single.config
index 86386ae04ac21d928c71b716181af373012ee176..0801e388291866630253a09a3eb4519feec87498 100644
--- a/src/nf_modules/RSEM/quantification_single.config
+++ b/src/nf_modules/RSEM/quantification_single.config
@@ -15,7 +15,6 @@ profiles {
module = "RSEM/1.3.0:SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/SAMtools/filter_bams.config b/src/nf_modules/SAMtools/filter_bams.config
index 5525c61f10726c71aea1fb078b40d46e74a9e695..a000c5cdbf7bc776fa33ed3e40396eb1503a9c0d 100644
--- a/src/nf_modules/SAMtools/filter_bams.config
+++ b/src/nf_modules/SAMtools/filter_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/SAMtools/index_bams.config b/src/nf_modules/SAMtools/index_bams.config
index a87ad5bf3a3b61de21b13accd7cf4209c8c13ac8..c44c2e73817c91ac8555f35540c4c200a0251ffc 100644
--- a/src/nf_modules/SAMtools/index_bams.config
+++ b/src/nf_modules/SAMtools/index_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/SAMtools/sort_bams.config b/src/nf_modules/SAMtools/sort_bams.config
index 111683a20f6f6cbe7d1bd4ab0c485f095e87119f..c0e08d020404d8b850974c71a53d148eec71bdd6 100644
--- a/src/nf_modules/SAMtools/sort_bams.config
+++ b/src/nf_modules/SAMtools/sort_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/SAMtools/split_bams.config b/src/nf_modules/SAMtools/split_bams.config
index e1f43fa90d5b697072614616af061acc7ab56d2d..3ef8321eee08c38806aae6e9401f45333efb02b6 100644
--- a/src/nf_modules/SAMtools/split_bams.config
+++ b/src/nf_modules/SAMtools/split_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "SAMtools/1.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/SRAtoolkit/fastqdump.config b/src/nf_modules/SRAtoolkit/fastqdump.config
index 19937da59ca9e36d538ef3ed4fa0751cd50a65e9..edd7856acd5e28209b43efb295eca627d61f4a8a 100644
--- a/src/nf_modules/SRAtoolkit/fastqdump.config
+++ b/src/nf_modules/SRAtoolkit/fastqdump.config
@@ -15,7 +15,6 @@ profiles {
module = "SRAtoolkit/2.8.2"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/UrQt/trimming_paired.config b/src/nf_modules/UrQt/trimming_paired.config
index ba68637b1f6ac288214ad2e80ce5586723688655..cc92880369e6c9ee7dba9871df73df9616a94ec5 100644
--- a/src/nf_modules/UrQt/trimming_paired.config
+++ b/src/nf_modules/UrQt/trimming_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "UrQt/d62c1f8"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "5GB"
time = "12h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/UrQt/trimming_single.config b/src/nf_modules/UrQt/trimming_single.config
index ba68637b1f6ac288214ad2e80ce5586723688655..cc92880369e6c9ee7dba9871df73df9616a94ec5 100644
--- a/src/nf_modules/UrQt/trimming_single.config
+++ b/src/nf_modules/UrQt/trimming_single.config
@@ -15,7 +15,6 @@ profiles {
module = "UrQt/d62c1f8"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "5GB"
time = "12h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config
index d981cd3095d57fd2d5f7b81893c4be1a57e0f4d1..5f176c685220e8a89ae6c4bd7fceaae2ad1019dc 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_paired.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "cutadapt/1.14"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config
index d981cd3095d57fd2d5f7b81893c4be1a57e0f4d1..5f176c685220e8a89ae6c4bd7fceaae2ad1019dc 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_single.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_single.config
@@ -15,7 +15,6 @@ profiles {
module = "cutadapt/1.14"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config
index b433677f7f5464e47426102b2c11c1e66d5898b3..984e336a1bf142a58df107ae6c234204d8b6327d 100644
--- a/src/nf_modules/cutadapt/trimming_paired.config
+++ b/src/nf_modules/cutadapt/trimming_paired.config
@@ -15,7 +15,6 @@ profiles {
module = "cutadapt/1.14"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config
index b433677f7f5464e47426102b2c11c1e66d5898b3..984e336a1bf142a58df107ae6c234204d8b6327d 100644
--- a/src/nf_modules/cutadapt/trimming_single.config
+++ b/src/nf_modules/cutadapt/trimming_single.config
@@ -15,7 +15,6 @@ profiles {
module = "cutadapt/1.14"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
diff --git a/src/nf_modules/sambamba/index_bams.config b/src/nf_modules/sambamba/index_bams.config
index ea511a0be2ad9a56813aaf926295969d8a217256..6bbae437064053b81f104ba7c3a48abf9b343db2 100644
--- a/src/nf_modules/sambamba/index_bams.config
+++ b/src/nf_modules/sambamba/index_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "sambamba/0.6.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/sambamba/sort_bams.config b/src/nf_modules/sambamba/sort_bams.config
index 6ad67ab05fc8174b5b68c414ac00e5e2f8eb7f06..c60ee44e65201802676a351cee8f776ffda59194 100644
--- a/src/nf_modules/sambamba/sort_bams.config
+++ b/src/nf_modules/sambamba/sort_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "sambamba/0.6.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/sambamba/split_bams.config b/src/nf_modules/sambamba/split_bams.config
index fe8e3ab86faac57d7e202826a2d6caf9601b361b..51afa4faef749ff287e11bff0869ab321e6cb858 100644
--- a/src/nf_modules/sambamba/split_bams.config
+++ b/src/nf_modules/sambamba/split_bams.config
@@ -15,7 +15,6 @@ profiles {
module = "sambamba/0.6.7"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/nf_modules/samblaster/dedup_sams.config b/src/nf_modules/samblaster/dedup_sams.config
index eeba96b2396dab67af9df26bb4c0a2cac0dd83b3..6aeaec5fb5cfa2d2eb9c4467bc82b32fdb4bb93f 100644
--- a/src/nf_modules/samblaster/dedup_sams.config
+++ b/src/nf_modules/samblaster/dedup_sams.config
@@ -15,7 +15,6 @@ profiles {
module = "samblaster/0.1.24"
executor = "sge"
clusterOptions = "-m e -cwd -V"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
diff --git a/src/training_dataset.config b/src/training_dataset.config
index 3d804cca344e67c5a051159cf5b46a029d3f325f..b416751d02f3dbfb438a535838bd95476e3282f1 100644
--- a/src/training_dataset.config
+++ b/src/training_dataset.config
@@ -45,7 +45,6 @@ profiles {
module = "BEDtools/2.25.0"
executor = "sge"
clusterOptions = "-m be -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -55,7 +54,6 @@ profiles {
module = "BEDtools/2.25.0"
executor = "sge"
clusterOptions = "-m be -cwd -V"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -64,7 +62,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "Bowtie2/2.3.4.1"
executor = "sge"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -74,7 +71,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "Bowtie2/2.3.4.1:SAMtools/1.7"
executor = "sge"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -84,7 +80,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -93,7 +88,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -102,7 +96,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -111,7 +104,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "Bowtie2/2.3.4.1:SAMtools/1.7"
executor = "sge"
- cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -121,7 +113,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -130,7 +121,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
@@ -139,7 +129,6 @@ profiles {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
- cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'