diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index 49bc912aa8f753770159749d8b50608e7888b267..5a80bfb21afa891d98f3d8995ecb256f8df51a16 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -33,6 +33,18 @@ profiles { } } } + ccin2p3 { + process{ + withName: index_fasta { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/kallisto/0.44.0/:$PATH" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n -S '/usr/local/bin/bash -l'" + cpus = 4 + memory = "8GB" + time = "24h" + queue = 'mc_huge' + penv = 'multicores 4' + } + } + } } - -