From 000191158171df80958a680fc1bed4b2ca978384 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 13:54:21 +0200
Subject: [PATCH] kallisto_index.php: fix fasta path
---
src/kallisto_index.pbs | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs
index 18647fe9..f280ef6b 100644
--- a/src/kallisto_index.pbs
+++ b/src/kallisto_index.pbs
@@ -25,5 +25,5 @@ PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf
CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \
---fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta \
+--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
-w "${SCRATCH}"
--
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