From a6f24d27a12df4979a473cd3e7d88fd36b311f7b Mon Sep 17 00:00:00 2001
From: vvanoost <vincent.vanoosthuyse@ens-lyon.fr>
Date: Tue, 24 Jul 2018 15:37:48 +0200
Subject: [PATCH] writing bowtie2 report
---
src/RNAseq_sen1D.nf | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/RNAseq_sen1D.nf b/src/RNAseq_sen1D.nf
index 167e046..b2a86e2 100644
--- a/src/RNAseq_sen1D.nf
+++ b/src/RNAseq_sen1D.nf
@@ -57,6 +57,8 @@ process random_bases_4_trimming {
${reads[0]} ${reads[1]} > ${pair_id}_report.txt
"""
}
+
+
/*
* urqt :
* Imputs : fastq files
@@ -142,6 +144,7 @@ process mapping_fastq {
output:
set pair_id, "*.bam" into bam_files
+ file "*_bowtie2_report.txt" into mapping_fastq_report
script:
"""
--
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