From 8523d5f03c2133d9a9e57fdbba0e9bb8cca11ff3 Mon Sep 17 00:00:00 2001
From: Vincent Vanoosthuyse <vincent.vanoosthuyse@ens-lyon.fr>
Date: Mon, 23 Jul 2018 13:31:59 +0200
Subject: [PATCH] change params.fastq for bowtie2
---
src/RNAseq_sen1D.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_sen1D.nf b/src/RNAseq_sen1D.nf
index 2727c9d..99cbbd1 100644
--- a/src/RNAseq_sen1D.nf
+++ b/src/RNAseq_sen1D.nf
@@ -131,7 +131,7 @@ fi
* for paired-end data
*/
-params.fastq = "$baseDir/data/fastq/*_{1,2}.fastq"
+params.fastq = "$baseDir/data/fastq/trimming/*_trim_{1,2}.fastq.gz"
params.index = "$baseDir/data/index/*.index.*"
log.info "fastq files : ${params.fastq}"
--
GitLab