diff --git a/src/RNAseq_sen1D.nf b/src/RNAseq_sen1D.nf index 2727c9ddc03b1bc630fdaa5cd1c0cf82100417a8..99cbbd1dd1573c07f138bb0d432069ae1c873fec 100644 --- a/src/RNAseq_sen1D.nf +++ b/src/RNAseq_sen1D.nf @@ -131,7 +131,7 @@ fi * for paired-end data */ -params.fastq = "$baseDir/data/fastq/*_{1,2}.fastq" +params.fastq = "$baseDir/data/fastq/trimming/*_trim_{1,2}.fastq.gz" params.index = "$baseDir/data/index/*.index.*" log.info "fastq files : ${params.fastq}"