From 7e0c13e2f58e6340ed2ba1c18b0a182f2d464925 Mon Sep 17 00:00:00 2001
From: Vincent Vanoosthuyse <vincent.vanoosthuyse@ens-lyon.fr>
Date: Mon, 23 Jul 2018 14:53:51 +0200
Subject: [PATCH] command to start pipeline

---
 src/RNAseq_sen1D.sh | 1 +
 1 file changed, 1 insertion(+)
 create mode 100644 src/RNAseq_sen1D.sh

diff --git a/src/RNAseq_sen1D.sh b/src/RNAseq_sen1D.sh
new file mode 100644
index 0000000..3ef60ca
--- /dev/null
+++ b/src/RNAseq_sen1D.sh
@@ -0,0 +1 @@
+./nextflow src/RNASeq_sen1D.nf -c src/RNASeq_sen1D.config -profile docker -resume -with-dag results/RNASeq_dag.pdf -with-timeline results/RNASeq_timeline --fasta data/bam/S_pombe_full_genome_ncbi_2017_04_27.fasta --fastq "data/fastq/*_R{1,2}.fastq.gz"
-- 
GitLab