diff --git a/src/RNAseq_sen1D_bowtie2_SE.config b/src/RNAseq_sen1D_bowtie2_SE.config
index ce64be961cdc7d26d6c90829f672274056bb4cae..478c45e83eceeed1389a90f2ebf545c56dbe8343 100644
--- a/src/RNAseq_sen1D_bowtie2_SE.config
+++ b/src/RNAseq_sen1D_bowtie2_SE.config
@@ -33,6 +33,9 @@ profiles {
       $mapping_fastq {
         container = "bowtie2:2.3.4.1"
       }
+      $quality_filtered_bam {
+        container = "samtools:1.7"
+      }
       $sort_bam {
         container = "samtools:1.7"
       }
@@ -132,6 +135,9 @@ profiles {
       $mapping_fastq {
         beforeScript = "module purge; module load SAMtools/1.7; module load Bowtie2/2.3.4.1"
       }
+      $quality_filtered_bam {
+        beforeScript = "module purge; module load SAMtools/1.7"
+      }
       $sort_bam {
         beforeScript = "module purge; module load SAMtools/1.7"
       }