From 211d7cd721e98f56d4ae0a70e51859b94b7c42a9 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 31 May 2018 15:01:30 +0200
Subject: [PATCH] RSEM/1.3.0: add docker files
---
src/nf_modules/RSEM/1.3.0/Dockerfile | 22 ++++++++++++++++++++++
src/nf_modules/RSEM/1.3.0/docker_init.sh | 2 ++
2 files changed, 24 insertions(+)
create mode 100644 src/nf_modules/RSEM/1.3.0/Dockerfile
create mode 100755 src/nf_modules/RSEM/1.3.0/docker_init.sh
diff --git a/src/nf_modules/RSEM/1.3.0/Dockerfile b/src/nf_modules/RSEM/1.3.0/Dockerfile
new file mode 100644
index 0000000..14d4757
--- /dev/null
+++ b/src/nf_modules/RSEM/1.3.0/Dockerfile
@@ -0,0 +1,22 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV RSEM_VERSION=1.3.0
+ENV BOWTIE2_VERSION=2.3.4.1
+ENV PACKAGES git=1:2.17.0* \
+ build-essential=12.4* \
+ ca-certificates=20180409 \
+ zlib1g-dev=1:1.2.11* \
+ bowtie2=${BOWTIE2_VERSION}*
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
+
+RUN git clone https://github.com/deweylab/RSEM.git RSEM_${RSEM_VERSION} && \
+ cd RSEM_${RSEM_VERSION} && \
+ git checkout tags/v${RSEM_VERSION} && \
+ make && \
+ cd .. && \
+ mv RSEM_${RSEM_VERSION}/rsem-* RSEM_${RSEM_VERSION}/rsem_* RSEM_${RSEM_VERSION}/convert-* RSEM_${RSEM_VERSION}/extract-* /usr/bin/ && \
+ rm -Rf RSEM_${RSEM_VERSION}
diff --git a/src/nf_modules/RSEM/1.3.0/docker_init.sh b/src/nf_modules/RSEM/1.3.0/docker_init.sh
new file mode 100755
index 0000000..498ea81
--- /dev/null
+++ b/src/nf_modules/RSEM/1.3.0/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/nf_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
--
GitLab