diff --git a/src/nf_modules/RSEM/1.3.0/Dockerfile b/src/nf_modules/RSEM/1.3.0/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..14d4757e0aba508b40e578aee03f2f9415b8e5f1 --- /dev/null +++ b/src/nf_modules/RSEM/1.3.0/Dockerfile @@ -0,0 +1,22 @@ +FROM ubuntu:18.04 +MAINTAINER Laurent Modolo + +ENV RSEM_VERSION=1.3.0 +ENV BOWTIE2_VERSION=2.3.4.1 +ENV PACKAGES git=1:2.17.0* \ + build-essential=12.4* \ + ca-certificates=20180409 \ + zlib1g-dev=1:1.2.11* \ + bowtie2=${BOWTIE2_VERSION}* + +RUN apt-get update && \ + apt-get install -y --no-install-recommends ${PACKAGES} && \ + apt-get clean + +RUN git clone https://github.com/deweylab/RSEM.git RSEM_${RSEM_VERSION} && \ + cd RSEM_${RSEM_VERSION} && \ + git checkout tags/v${RSEM_VERSION} && \ + make && \ + cd .. && \ + mv RSEM_${RSEM_VERSION}/rsem-* RSEM_${RSEM_VERSION}/rsem_* RSEM_${RSEM_VERSION}/convert-* RSEM_${RSEM_VERSION}/extract-* /usr/bin/ && \ + rm -Rf RSEM_${RSEM_VERSION} diff --git a/src/nf_modules/RSEM/1.3.0/docker_init.sh b/src/nf_modules/RSEM/1.3.0/docker_init.sh new file mode 100755 index 0000000000000000000000000000000000000000..498ea8169f6d2625aae59623100582328b96a7b0 --- /dev/null +++ b/src/nf_modules/RSEM/1.3.0/docker_init.sh @@ -0,0 +1,2 @@ +#!/bin/sh +docker build src/nf_modules/RSEM/1.3.0 -t 'rsem:1.3.0'