diff --git a/src/docker_modules/BEDtools/2.25.0/docker_init.sh b/src/docker_modules/BEDtools/2.25.0/docker_init.sh
index a2a49aa54e7cb33d8c4f9b5e8c64409e4573b24d..c5c6f802290d6b629a949de8962709e3c5d7f258 100755
--- a/src/docker_modules/BEDtools/2.25.0/docker_init.sh
+++ b/src/docker_modules/BEDtools/2.25.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/BEDtools/2.25.0 -t 'bedtools:2.25.0'
+docker build src/docker_modules/BEDtools/2.25.0 -t 'bedtools:2.25.0'
diff --git a/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh b/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
index 85f25defe3aea4be79ec3b973906ef0dee600a74..bba04c2bded6ebb0ba035ebead94b45effc7f486 100755
--- a/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
+++ b/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'
+docker build src/docker_modules/Bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'
diff --git a/src/docker_modules/FastQC/0.11.5/docker_init.sh b/src/docker_modules/FastQC/0.11.5/docker_init.sh
index 570878e6cfb9d539572225065dbd9491572dc5d4..d8d557f5a93c4d163686285b8d5c0123006b3750 100755
--- a/src/docker_modules/FastQC/0.11.5/docker_init.sh
+++ b/src/docker_modules/FastQC/0.11.5/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/FastQC/0.11.5 -t 'fastqc:0.11.5'
+docker build src/docker_modules/FastQC/0.11.5 -t 'fastqc:0.11.5'
diff --git a/src/docker_modules/HTSeq/0.8.0/docker_init.sh b/src/docker_modules/HTSeq/0.8.0/docker_init.sh
index 1c135c665b81da23c4dbeabd3b5fb7554c1d47b3..5b8415e2d4adeb65314a29d7cf7d386eba96e6cc 100755
--- a/src/docker_modules/HTSeq/0.8.0/docker_init.sh
+++ b/src/docker_modules/HTSeq/0.8.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/HTSeq/0.8.0 -t 'htseq:0.8.0'
+docker build src/docker_modules/HTSeq/0.8.0 -t 'htseq:0.8.0'
diff --git a/src/docker_modules/Kallisto/0.43.1/docker_init.sh b/src/docker_modules/Kallisto/0.43.1/docker_init.sh
index af8c765814fa5e2ddecdd95940c18c1e728f8f21..8904daee8e494a755d44ab85f935c209ef80e5e1 100755
--- a/src/docker_modules/Kallisto/0.43.1/docker_init.sh
+++ b/src/docker_modules/Kallisto/0.43.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'
+docker build src/docker_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'
diff --git a/src/docker_modules/MultiQC/1.0/docker_init.sh b/src/docker_modules/MultiQC/1.0/docker_init.sh
index c49305f12a474237ce460df4551f3a2c28dd6fd3..7fb1b64ef11994fa6d555bf125242399dd7fce18 100755
--- a/src/docker_modules/MultiQC/1.0/docker_init.sh
+++ b/src/docker_modules/MultiQC/1.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/MultiQC/1.0 -t 'multiqc:1.0'
+docker build src/docker_modules/MultiQC/1.0 -t 'multiqc:1.0'
diff --git a/src/docker_modules/RSEM/1.3.0/docker_init.sh b/src/docker_modules/RSEM/1.3.0/docker_init.sh
index 498ea8169f6d2625aae59623100582328b96a7b0..5d788282b75adba0b372667e3a458a90b6aa4bfe 100755
--- a/src/docker_modules/RSEM/1.3.0/docker_init.sh
+++ b/src/docker_modules/RSEM/1.3.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
+docker build src/docker_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
diff --git a/src/docker_modules/SAMtools/1.7/docker_init.sh b/src/docker_modules/SAMtools/1.7/docker_init.sh
index 642b0d4cf081399e006549d58e0548c115d6ce9a..31916f45aa54dac20237de987b065153cd6022d9 100755
--- a/src/docker_modules/SAMtools/1.7/docker_init.sh
+++ b/src/docker_modules/SAMtools/1.7/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/SAMtools/1.7 -t 'samtools:1.7'
+docker build src/docker_modules/SAMtools/1.7 -t 'samtools:1.7'
diff --git a/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh b/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
index 07871a2447603775707ecfdf571d8e9a6b8d83e0..501f769edecaf06b7a967d8b3aaecfb8e0ff7454 100755
--- a/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
+++ b/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'
+docker build src/docker_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'
diff --git a/src/docker_modules/Salmon/0.8.2/docker_init.sh b/src/docker_modules/Salmon/0.8.2/docker_init.sh
index ecfa970f86b85222cf7cac47d369fa1c2e645662..ea75cf11004089375ff2dc56b619b08cb51955b2 100755
--- a/src/docker_modules/Salmon/0.8.2/docker_init.sh
+++ b/src/docker_modules/Salmon/0.8.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Salmon/0.8.2 -t 'salmon:0.8.2'
+docker build src/docker_modules/Salmon/0.8.2 -t 'salmon:0.8.2'
diff --git a/src/docker_modules/TopHat/2.1.1/docker_init.sh b/src/docker_modules/TopHat/2.1.1/docker_init.sh
index 715677f22f9d46051b6b4a3f17e7295efd9b2b4c..55e782f2fa5f6e45216c50fc86bc360fb8fa61b2 100755
--- a/src/docker_modules/TopHat/2.1.1/docker_init.sh
+++ b/src/docker_modules/TopHat/2.1.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/TopHat/2.1.1 -t 'tophat:2.1.1'
+docker build src/docker_modules/TopHat/2.1.1 -t 'tophat:2.1.1'
diff --git a/src/docker_modules/Trimmomatic/0.36/docker_init.sh b/src/docker_modules/Trimmomatic/0.36/docker_init.sh
index 96ee90906f9266d9a7934df45bed3aa26a23af22..dd5c050d1c12a0a60b836e395a88f5a1a1f6e061 100755
--- a/src/docker_modules/Trimmomatic/0.36/docker_init.sh
+++ b/src/docker_modules/Trimmomatic/0.36/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Trimmomatic/0.36 -t 'trimmomatic:0.36'
+docker build src/docker_modules/Trimmomatic/0.36 -t 'trimmomatic:0.36'
diff --git a/src/docker_modules/UrQt/d62c1f8/docker_init.sh b/src/docker_modules/UrQt/d62c1f8/docker_init.sh
index 5a9e281b7689769c3307669b8c109c5dffeef149..980213805ff80db255f09294b36e330a915d5e18 100755
--- a/src/docker_modules/UrQt/d62c1f8/docker_init.sh
+++ b/src/docker_modules/UrQt/d62c1f8/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/UrQt/d62c1f8 -t 'urqt:62c1f8'
+docker build src/docker_modules/UrQt/d62c1f8 -t 'urqt:62c1f8'
diff --git a/src/docker_modules/canu/1.6/docker_init.sh b/src/docker_modules/canu/1.6/docker_init.sh
index b1579704347927b4db4abd985b850fe0aa9de72c..5e0e3b44e3422aa159fc4b9d5f1534365cbfeaaf 100755
--- a/src/docker_modules/canu/1.6/docker_init.sh
+++ b/src/docker_modules/canu/1.6/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/canu/1.6 -t 'canu:1.6'
+docker build src/docker_modules/canu/1.6 -t 'canu:1.6'
diff --git a/src/docker_modules/cutadapt/1.14/docker_init.sh b/src/docker_modules/cutadapt/1.14/docker_init.sh
index 57657469ce6305e9ac96015cd32ced1dfdcc8fd0..8edfebf52d0f231955d1c1979b4efc044a9664e1 100755
--- a/src/docker_modules/cutadapt/1.14/docker_init.sh
+++ b/src/docker_modules/cutadapt/1.14/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/cutadapt/1.14 -t 'cutadapt:1.14'
+docker build src/docker_modules/cutadapt/1.14 -t 'cutadapt:1.14'
diff --git a/src/docker_modules/deepTools/3.0.2/docker_init.sh b/src/docker_modules/deepTools/3.0.2/docker_init.sh
index 23ea15b1d77ad078fd25cd440b7c62cbf6a88204..ed0f069b1a759e5e13566add9212c853ca27df49 100755
--- a/src/docker_modules/deepTools/3.0.2/docker_init.sh
+++ b/src/docker_modules/deepTools/3.0.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/deepTools/3.0.2 -t 'deeptools:3.0.2'
+docker build src/docker_modules/deepTools/3.0.2 -t 'deeptools:3.0.2'
diff --git a/src/docker_modules/file_handle/0.1.1/docker_init.sh b/src/docker_modules/file_handle/0.1.1/docker_init.sh
index 40644a7c9dd7f885c3f64a7c6dd1d9a8e85d1c0c..e7af3cb07fe30b3c66884f2e9871beb88b29c58c 100755
--- a/src/docker_modules/file_handle/0.1.1/docker_init.sh
+++ b/src/docker_modules/file_handle/0.1.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/file_handle/0.1.1 -t 'file_handle:0.1.1'
+docker build src/docker_modules/file_handle/0.1.1 -t 'file_handle:0.1.1'
diff --git a/src/docker_modules/pigz/2.4/docker_init.sh b/src/docker_modules/pigz/2.4/docker_init.sh
index 1a0eeeb41ea4c008898c4250727e513c778fa2be..776a4c54e176405175371d5785151ee651acb69d 100755
--- a/src/docker_modules/pigz/2.4/docker_init.sh
+++ b/src/docker_modules/pigz/2.4/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/pigz/2.4 -t 'pigz:2.4'
+docker build src/docker_modules/pigz/2.4 -t 'pigz:2.4'