<html><head><meta name="color-scheme" content="light dark"></head><body><pre style="word-wrap: break-word; white-space: pre-wrap;">Bootstrap: docker
From: ubuntu:18.04

%labels
MAINTAINER Nicolas Fontrodona

%post
HISAT2_VERSION=2.0.0
PACKAGES="unzip \
gcc \
g++ \
make \
curl \
ca-certificates"

apt-get update &amp;&amp; \
apt-get install -y --no-install-recommends ${PACKAGES} &amp;&amp; \
apt-get clean

curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip &amp;&amp; \
unzip hisat2_linux-v${HISAT2_VERSION}.zip &amp;&amp; \
cd hisat2-${HISAT2_VERSION}-beta &amp;&amp; \
make &amp;&amp; \
cp hisat2 /usr/bin &amp;&amp; \
cp hisat2-* /usr/bin &amp;&amp; \
rm -Rf hisat2-${HISAT2_VERSION}-beta

%environment
export HISAT2_VERSION=2.0.0

%runscript
exec /bin/bash "$@"
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