From f842d1004252f9dc95d60d696c2959e1201b7b21 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 23 Aug 2018 15:29:20 +0200
Subject: [PATCH] training_dataset.nf: add command example in header
---
src/training_dataset.nf | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/src/training_dataset.nf b/src/training_dataset.nf
index c8c7e66..017f94b 100644
--- a/src/training_dataset.nf
+++ b/src/training_dataset.nf
@@ -11,6 +11,13 @@ input:
output:
- sort fasta
- sort fastq
+
+example for paired-end data:
+./nextflow src/training_dataset.nf -c src/training_dataset.config --fasta "data/genome.fa" --fastq_paired "data/BNLN16.R{1,2}*" --chromosome "X" --start 5305683 --stop 5333928 -resume
+
+example for single-end data:
+./nextflow src/training_dataset.nf -c src/training_dataset.config --fasta "data/genome.fa" --fastq_single "data/BNLN16.R1*" --chromosome "X" --start 5305683 --stop 5333928 -resume
+
*/
params.fastq_paired = ""
--
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