From ebf79d0c066e1e738a733208bbdf064c7b21215d Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Mar 2019 13:25:09 +0100
Subject: [PATCH] tophat: add singularity files
---
src/singularity_modules/tophat/2.1.1/build.sh | 3 +++
.../tophat/2.1.1/tophat.def | 19 +++++++++++++++++++
2 files changed, 22 insertions(+)
create mode 100755 src/singularity_modules/tophat/2.1.1/build.sh
create mode 100644 src/singularity_modules/tophat/2.1.1/tophat.def
diff --git a/src/singularity_modules/tophat/2.1.1/build.sh b/src/singularity_modules/tophat/2.1.1/build.sh
new file mode 100755
index 0000000..07f2748
--- /dev/null
+++ b/src/singularity_modules/tophat/2.1.1/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def
+singularity sign bin/tophat:2.1.1.sif
diff --git a/src/singularity_modules/tophat/2.1.1/tophat.def b/src/singularity_modules/tophat/2.1.1/tophat.def
new file mode 100644
index 0000000..c683ba3
--- /dev/null
+++ b/src/singularity_modules/tophat/2.1.1/tophat.def
@@ -0,0 +1,19 @@
+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+TOPHAT_VERSION=2.1.1
+PACKAGES=tophat=${BOWTIE2_VERSION}*
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+%environment
+export TOPHAT_VERSION=2.1.1
+
+%runscript
+exec /bin/bash "$@"
--
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