diff --git a/src/singularity_modules/tophat/2.1.1/build.sh b/src/singularity_modules/tophat/2.1.1/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..07f274812047137f10b9096b8c74c52132b19980 --- /dev/null +++ b/src/singularity_modules/tophat/2.1.1/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def +singularity sign bin/tophat:2.1.1.sif diff --git a/src/singularity_modules/tophat/2.1.1/tophat.def b/src/singularity_modules/tophat/2.1.1/tophat.def new file mode 100644 index 0000000000000000000000000000000000000000..c683ba380f6dfbb105c0c57b6380e533568dda82 --- /dev/null +++ b/src/singularity_modules/tophat/2.1.1/tophat.def @@ -0,0 +1,19 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +TOPHAT_VERSION=2.1.1 +PACKAGES=tophat=${BOWTIE2_VERSION}* + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +%environment +export TOPHAT_VERSION=2.1.1 + +%runscript +exec /bin/bash "$@"