From dffc664480fede3c7a7e4643e3598e07769d7bd7 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Mar 2019 15:55:34 +0100
Subject: [PATCH] multiqc: add singularity files
---
src/singularity_modules/multiqc/1.0/build.sh | 3 ++
.../multiqc/1.0/multiqc.def | 39 +++++++++++++++++++
2 files changed, 42 insertions(+)
create mode 100755 src/singularity_modules/multiqc/1.0/build.sh
create mode 100644 src/singularity_modules/multiqc/1.0/multiqc.def
diff --git a/src/singularity_modules/multiqc/1.0/build.sh b/src/singularity_modules/multiqc/1.0/build.sh
new file mode 100755
index 0000000..1d9da65
--- /dev/null
+++ b/src/singularity_modules/multiqc/1.0/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/multiqc:1.0.sif src/singularity_modules/multiqc/1.0/multiqc.def
+singularity sign bin/multiqc:1.0.sif
diff --git a/src/singularity_modules/multiqc/1.0/multiqc.def b/src/singularity_modules/multiqc/1.0/multiqc.def
new file mode 100644
index 0000000..195def4
--- /dev/null
+++ b/src/singularity_modules/multiqc/1.0/multiqc.def
@@ -0,0 +1,39 @@
+Bootstrap: docker
+From: debian:stretch
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+MULTIQC_VERSION=1.0
+PACKAGES="build-essential \
+ python3-pip \
+ python3-setuptools \
+ python3-dev \
+ python3-wheel \
+ procps \
+ locales"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+locale-gen en_US.UTF-8
+LC_ALL=en_US.utf-8
+LANG=en_US.utf-8
+LC_ALL=C.UTF-8
+LANG=C.UTF-8
+
+pip3 install multiqc==${MULTIQC_VERSION}
+
+%environment
+export KALLISTO_VERSION=0.44.0
+export locale-gen en_US.UTF-8
+export LC_ALL=en_US.utf-8
+export LANG=en_US.utf-8
+export LC_ALL=C.UTF-8
+export LANG=C.UTF-8
+
+%runscript
+exec /bin/bash "$@"
+
--
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