From d854d05157b500e47fddd337e3b4698e18d42a43 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent@modolo.fr> Date: Fri, 15 Feb 2019 12:37:44 +0100 Subject: [PATCH] TP_experimental_biologists.md : fix for PSMN computers --- doc/TP_experimental_biologists.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/doc/TP_experimental_biologists.md b/doc/TP_experimental_biologists.md index d889ad5..f0aac22 100644 --- a/doc/TP_experimental_biologists.md +++ b/doc/TP_experimental_biologists.md @@ -164,9 +164,19 @@ After writing this first pipeline, you may want to test it. To do that, first cl You can then run the following commands to download your project on your computer: +If you are on a PSMN computer: + ```sh +pip install cutadapt=1.14 PATH="/scratch/lmodolo/:$PATH" git config --global http.sslVerify false +``` + +and then : + +> Don't forget to replace *https://gitlab.biologie.ens-lyon.fr/* by *gitlab_lbmc* if you are using your own computer + +```sh git clone https://gitlab.biologie.ens-lyon.fr/<usr_name>/nextflow.git cd nextflow src/install_nextflow.sh -- GitLab