diff --git a/README.md b/README.md
index 9429d2dd1d34ffcef000f94183cf92c723c304c7..1c352709a186617465a5d6f64fe4d6989b476ba9 100644
--- a/README.md
+++ b/README.md
@@ -89,7 +89,7 @@ Kallisto | ok | ok | ok
 MultiQC | ok | ok | ok
 RSEM | ok | ok | ok
 SAMtools | ok | ok | ok
-SRAtoolkit | **no** | ok | ok
+SRAtoolkit | ok | ok | ok
 Salmon | **no** | ok | ok
 TopHat | **no** | ok | ok
 Trimmomatic | **no** | ok | ok
@@ -99,8 +99,6 @@ cutadapt | ok | ok | ok
 deepTools | **no** | ok | ok
 file_handle | **no** | ok | ok
 pigz | **no** | ok | ok
-sra-tools | ok | **no** | **no**
-
 
 
 ## Contributing
diff --git a/src/nf_modules/SRAtoolkit/sratoolkit.config b/src/nf_modules/SRAtoolkit/sratoolkit.config
new file mode 100644
index 0000000000000000000000000000000000000000..128a4fef272aeb70993f5b614e0c34f901fc0c60
--- /dev/null
+++ b/src/nf_modules/SRAtoolkit/sratoolkit.config
@@ -0,0 +1,25 @@
+profiles {
+  docker {
+    docker.temp = 'auto'
+    docker.enabled = true
+    process {
+      $fastq_dump {
+        container = "sratoolkit:2.8.2"
+      }
+    }
+  }
+  sge {
+    process{
+      $fastq_dump {
+        beforeScript = "module purge; module load SRAtoolkit/2.8.2"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'monointeldeb128'
+      }
+    }
+  }
+}
diff --git a/src/nf_modules/sra-tools/sra-tools.nf b/src/nf_modules/SRAtoolkit/sratoolkit.nf
similarity index 68%
rename from src/nf_modules/sra-tools/sra-tools.nf
rename to src/nf_modules/SRAtoolkit/sratoolkit.nf
index 0ffa4f350dbd29e78b37317b35500efd041bb08f..9fce5e42ecd94f8534adb44fea892b7ee774dfa1 100644
--- a/src/nf_modules/sra-tools/sra-tools.nf
+++ b/src/nf_modules/SRAtoolkit/sratoolkit.nf
@@ -20,24 +20,24 @@ Channel
 
 //run is the column name containing SRR ids
 
-  process fastq-dump {
+process fastq_dump {
   tag {"${x.run}"}
   publishDir "results/download/fastq/${x.run}/", mode: 'copy'
+
   input:
-  val x  from SRR
+    val x  from SRR
+
   output:
-  file("*") into fastq
+    file("*") into fastq
 
   script:
-
-  """
-
-  fastq-dump --split-files --defline-seq '@\$ac_\$si/\$ri' --defline-qual "+"  ${x.run}
-  if [ -f ${x.run}_1.fastq ]
-  then
-    true
-  else
-    touch ${x.run}.fastq
-  fi
 """
-  }
+fastq-dump --split-files --defline-seq '@\$ac_\$si/\$ri' --defline-qual "+"  ${x.run}
+if [ -f ${x.run}_1.fastq ]
+then
+  true
+else
+  touch ${x.run}.fastq
+fi
+"""
+}
diff --git a/src/nf_modules/sra-tools/tests/fastqdump.nf b/src/nf_modules/SRAtoolkit/tests/fastqdump.nf
similarity index 60%
rename from src/nf_modules/sra-tools/tests/fastqdump.nf
rename to src/nf_modules/SRAtoolkit/tests/fastqdump.nf
index 8fdd50e489719c87aa356897492ab6b948317fd5..32579e70faa704f5667646a797dfdcd85e0c1cd2 100644
--- a/src/nf_modules/sra-tools/tests/fastqdump.nf
+++ b/src/nf_modules/SRAtoolkit/tests/fastqdump.nf
@@ -20,24 +20,25 @@ Channel
 
 //run is the column name containing SRR ids
 
-  process fastqdump {
+process fastq_dump {
   tag {"${x.run}"}
   publishDir "results/download/fastq/${x.run}/", mode: 'copy'
+
   input:
-  val x  from SRR
+    val x  from SRR
+
   output:
-  file("*") into fastq
+    file("*") into fastq
 
   script:
-
-  """
- #for test only 10000  reads are downloading with the option -N 10000 -X 20000
-  fastq-dump --split-files --defline-seq '@\$ac_\$si/\$ri' --defline-qual "+" -N 10000 -X 20000 ${x.run}
-  if [ -f ${x.run}_1.fastq ]
-  then
-    true
-  else
-    touch ${x.run}.fastq
-  fi
 """
-  }
+#for test only 10000  reads are downloading with the option -N 10000 -X 20000
+fastq-dump --split-files --defline-seq '@\$ac_\$si/\$ri' --defline-qual "+" -N 10000 -X 20000 ${x.run}
+if [ -f ${x.run}_1.fastq ]
+then
+  true
+else
+  touch ${x.run}.fastq
+fi
+"""
+}
diff --git a/src/nf_modules/sra-tools/tests/list-srr.txt b/src/nf_modules/SRAtoolkit/tests/list-srr.txt
similarity index 100%
rename from src/nf_modules/sra-tools/tests/list-srr.txt
rename to src/nf_modules/SRAtoolkit/tests/list-srr.txt
diff --git a/src/nf_modules/SRAtoolkit/tests/tests.sh b/src/nf_modules/SRAtoolkit/tests/tests.sh
new file mode 100755
index 0000000000000000000000000000000000000000..c5efbcc70a27461c6ed8f7d9abd8a30d62700b2c
--- /dev/null
+++ b/src/nf_modules/SRAtoolkit/tests/tests.sh
@@ -0,0 +1,4 @@
+nextflow src/nf_modules/SRAtoolkit/tests/fastqdump.nf \
+  -c src/nf_modules/SRAtoolkit/sratoolkit.config \
+  -profile docker \
+  --list_srr "src/nf_modules/SRAtoolkit/tests/list-srr.txt"
diff --git a/src/nf_modules/sra-tools/sra-tools.config b/src/nf_modules/sra-tools/sra-tools.config
deleted file mode 100644
index c49af21986d26422f7b2f0243a2237e324459301..0000000000000000000000000000000000000000
--- a/src/nf_modules/sra-tools/sra-tools.config
+++ /dev/null
@@ -1,17 +0,0 @@
-profiles {
-  docker {
-    docker.temp = 'auto'
-    docker.enabled = true
-    process {
-      $fastqdump {
-      container = "sratoolkit:2.8.2"
-      }    }
-  }
-  sge {
-    process{
-      $fastqdump {
-        beforeScript = "module purge; module load SRAtoolkit/2.8.2"
-      }
-    }
-  }
-}
diff --git a/src/nf_modules/sra-tools/tests/tests.sh b/src/nf_modules/sra-tools/tests/tests.sh
deleted file mode 100755
index 59e6c554ee37cb8d9f5bf57e8265884cdc39c374..0000000000000000000000000000000000000000
--- a/src/nf_modules/sra-tools/tests/tests.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-nextflow src/nf_modules/sra-tools/tests/fastqdump.nf \
-  -c src/nf_modules/sra-tools/sra-tools.config \
-  -profile docker \
-  --list_srr "src/nf_modules/sra-tools/tests/list-srr.txt"