diff --git a/src/1_JU28_59vs17_SNP_calling.sh b/src/1_JU28_59vs17_SNP_calling.sh index 42f5adb34582d014ceb772bbf697cdc01d27d994..61e11d4e0d78d2ad57087c737dffbb6115745cf3 100644 --- a/src/1_JU28_59vs17_SNP_calling.sh +++ b/src/1_JU28_59vs17_SNP_calling.sh @@ -27,3 +27,8 @@ src/intersect_SNP.R \ data/list_of_enzymes.csv ~/scripts/sms.sh "SNP analysis done" +mkdir -p results/blastall/ +makeblastdb -in data/fasta/DBG2OLC_output2.fasta -parse_seqids -dbtype nucl +blastn -query data/RNA5S_belari.fasta -db data/fasta/DBG2OLC_output2.fasta -out results/blastall/RNA5S.out +less results/blastall/RNA5S.out +