diff --git a/src/nf_modules/MultiQC/multiqc.nf b/src/nf_modules/MultiQC/multiqc.nf
deleted file mode 100644
index b64d7f6a20014893f6ad32bc47606e1cfb874f6f..0000000000000000000000000000000000000000
--- a/src/nf_modules/MultiQC/multiqc.nf
+++ /dev/null
@@ -1,25 +0,0 @@
-/*
-* multiqc :
-* Imputs : report files
-* Output :  multiqc report
-*/
-
-/*                      MultiQC                                     */
-
-process multiqc {
-  tag "$report.baseName"
-  publishDir "results/fastq/multiqc/", mode: 'copy'
-  cpus = 1
-
-  input:
-    file report from fastqc_report.collect()
-
-  output:
-    file "*multiqc_*" into multiqc_report
-
-  script:
-"""
-multiqc -f .
-"""
-}
-
diff --git a/src/nf_modules/MultiQC/multiqc.config b/src/nf_modules/MultiQC/multiqc_paired.config
similarity index 100%
rename from src/nf_modules/MultiQC/multiqc.config
rename to src/nf_modules/MultiQC/multiqc_paired.config
diff --git a/src/nf_modules/MultiQC/tests/multiqc_paired.nf b/src/nf_modules/MultiQC/multiqc_paired.nf
similarity index 100%
rename from src/nf_modules/MultiQC/tests/multiqc_paired.nf
rename to src/nf_modules/MultiQC/multiqc_paired.nf
diff --git a/src/nf_modules/MultiQC/multiqc_single.config b/src/nf_modules/MultiQC/multiqc_single.config
new file mode 100644
index 0000000000000000000000000000000000000000..c1bda95e70a612c7caf4825930e740faedd1c62d
--- /dev/null
+++ b/src/nf_modules/MultiQC/multiqc_single.config
@@ -0,0 +1,38 @@
+profiles {
+  docker {
+    docker.temp = 'auto'
+    docker.enabled = true
+    process {
+      $fastqc_fastq {
+        container = "fastqc:0.11.5"
+      }
+      $multiqc {
+        container = "multiqc:1.0"
+      }
+    }
+  }
+  sge {
+    process{
+      $fastqc_fastq {
+        beforeScript = "module purge; module load FastQC/0.11.5"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'monointeldeb128'
+      }
+      $multiqc {
+        beforeScript = "module purge; module load FastQC/1.0"
+        executor = "sge"
+        cpus = 1
+        memory = "5GB"
+        time = "6h"
+        queueSize = 1000
+        pollInterval = '60sec'
+        queue = 'monointeldeb128'
+      }
+    }
+  }
+}
diff --git a/src/nf_modules/MultiQC/tests/multiqc_single.nf b/src/nf_modules/MultiQC/multiqc_single.nf
similarity index 100%
rename from src/nf_modules/MultiQC/tests/multiqc_single.nf
rename to src/nf_modules/MultiQC/multiqc_single.nf
diff --git a/src/nf_modules/MultiQC/tests.sh b/src/nf_modules/MultiQC/tests.sh
new file mode 100755
index 0000000000000000000000000000000000000000..40b6522e2eb0f8abf2f6ea0be4b0903960beedcf
--- /dev/null
+++ b/src/nf_modules/MultiQC/tests.sh
@@ -0,0 +1,9 @@
+nextflow src/nf_modules/MultiQC/multiqc_paired.nf \
+  -c src/nf_modules/MultiQC/multiqc_paired.config \
+  -profile docker \
+  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
+
+nextflow src/nf_modules/MultiQC/multiqc_single.nf \
+  -c src/nf_modules/MultiQC/multiqc_single.config \
+  -profile docker \
+  --fastq "data/tiny_dataset/fastq/tiny_S.fastq"
diff --git a/src/nf_modules/MultiQC/tests/tests.sh b/src/nf_modules/MultiQC/tests/tests.sh
deleted file mode 100755
index 8aaa83c1e1eed5d173efd0b62fad37a5173734db..0000000000000000000000000000000000000000
--- a/src/nf_modules/MultiQC/tests/tests.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-nextflow src/nf_modules/MultiQC/tests/multiqc_paired.nf \
-  -c src/nf_modules/MultiQC/multiqc.config \
-  -profile docker \
-  --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
-
-nextflow src/nf_modules/MultiQC/tests/multiqc_single.nf \
-  -c src/nf_modules/MultiQC/multiqc.config \
-  -profile docker \
-  --fastq "data/tiny_dataset/fastq/tiny_S.fastq"