diff --git a/src/nf_modules/SRAtoolkit/fastqdump.config b/src/nf_modules/SRAtoolkit/fastqdump.config index d0e82733e9cc9ee229bfe22472a21bc32808b1b4..bedbcd57f0f3de18d0338306ab30c0a20a39c30e 100644 --- a/src/nf_modules/SRAtoolkit/fastqdump.config +++ b/src/nf_modules/SRAtoolkit/fastqdump.config @@ -11,13 +11,12 @@ profiles { psmn { process{ withname: fastq_dump { - beforeScript = "module purge; module load SRAtoolkit/2.8.2" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SRAtoolkit/2.8.2" executor = "sge" cpus = 1 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' + memory = "20GB" + time = "12h" queue = 'monointeldeb128' } }