diff --git a/src/singularity_modules/bedtools/2.25.0/BEDtools.def b/src/singularity_modules/bedtools/2.25.0/bedtools.def similarity index 100% rename from src/singularity_modules/bedtools/2.25.0/BEDtools.def rename to src/singularity_modules/bedtools/2.25.0/bedtools.def diff --git a/src/singularity_modules/bowtie/1.2.2/Bowtie.def b/src/singularity_modules/bowtie/1.2.2/bowtie.def similarity index 100% rename from src/singularity_modules/bowtie/1.2.2/Bowtie.def rename to src/singularity_modules/bowtie/1.2.2/bowtie.def diff --git a/src/singularity_modules/bowtie2/2.3.4.1/Bowtie2.def b/src/singularity_modules/bowtie2/2.3.4.1/bowtie2.def similarity index 100% rename from src/singularity_modules/bowtie2/2.3.4.1/Bowtie2.def rename to src/singularity_modules/bowtie2/2.3.4.1/bowtie2.def diff --git a/src/singularity_modules/bwa/0.7.17/BWA.def b/src/singularity_modules/bwa/0.7.17/bwa.def similarity index 100% rename from src/singularity_modules/bwa/0.7.17/BWA.def rename to src/singularity_modules/bwa/0.7.17/bwa.def diff --git a/src/singularity_modules/cutadapt/1.14/build.sh b/src/singularity_modules/cutadapt/1.14/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..d3973106d6784927962b46d43fc1ff6031b7561a --- /dev/null +++ b/src/singularity_modules/cutadapt/1.14/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/cutadapt:1.14.sif src/singularity_modules/cutadapt/1.14/cutadapt.def +singularity sign bin/cutadapt:1.14.sif diff --git a/src/singularity_modules/cutadapt/1.14/cutadapt.def b/src/singularity_modules/cutadapt/1.14/cutadapt.def new file mode 100644 index 0000000000000000000000000000000000000000..90cafb605f282faf8fa836ef7eea5c6e99f8fa5d --- /dev/null +++ b/src/singularity_modules/cutadapt/1.14/cutadapt.def @@ -0,0 +1,27 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +CUTADAPT_VERSION=1.14 +PACKAGES="bash \ + python3 \ + python3-dev \ + musl-dev \ + python3-pip \ + gcc" + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +pip3 install setuptools +pip3 install cutadapt==${CUTADAPT_VERSION} + +%environment +export CUTADAPT_VERSION=1.14 + +%runscript +exec /bin/bash "$@" diff --git a/src/singularity_modules/cutadapt/1.15/build.sh b/src/singularity_modules/cutadapt/1.15/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..440d84aa4c0f97589ab4f5e6e5bc3a677ec805ef --- /dev/null +++ b/src/singularity_modules/cutadapt/1.15/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/cutadapt:1.15.sif src/singularity_modules/cutadapt/1.15/cutadapt.def +singularity sign bin/cutadapt:1.15.sif diff --git a/src/singularity_modules/cutadapt/1.15/cutadapt.def b/src/singularity_modules/cutadapt/1.15/cutadapt.def new file mode 100644 index 0000000000000000000000000000000000000000..041f3a18dd8fea721bedb3e39cd9b0ab0f73187c --- /dev/null +++ b/src/singularity_modules/cutadapt/1.15/cutadapt.def @@ -0,0 +1,28 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +CUTADAPT_VERSION=1.15 +PACKAGES="bash \ + python3 \ + python3-dev \ + musl-dev \ + python3-pip \ + gcc" + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +pip3 install setuptools +pip3 install cutadapt==${CUTADAPT_VERSION} + +%environment +export CUTADAPT_VERSION=1.14 + +%runscript +exec /bin/bash "$@" +xec /bin/bash "$@" diff --git a/src/singularity_modules/urqt/d62c1f8/UrQt.def b/src/singularity_modules/urqt/d62c1f8/urqt.def similarity index 100% rename from src/singularity_modules/urqt/d62c1f8/UrQt.def rename to src/singularity_modules/urqt/d62c1f8/urqt.def