From 7efa0b930373ff3757e75d144ff506cdf4c65c8a Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 18 Sep 2018 10:28:25 +0200
Subject: [PATCH] 1_JU28_59vs17_SNP_calling.sh: add sh to launch pipeline

---
 src/1_JU28_59vs17_SNP_calling.sh | 3 +++
 1 file changed, 3 insertions(+)
 create mode 100644 src/1_JU28_59vs17_SNP_calling.sh

diff --git a/src/1_JU28_59vs17_SNP_calling.sh b/src/1_JU28_59vs17_SNP_calling.sh
new file mode 100644
index 0000000..19c2d0e
--- /dev/null
+++ b/src/1_JU28_59vs17_SNP_calling.sh
@@ -0,0 +1,3 @@
+#!/bin/sh
+./nextflow src/SNP_calling.nf -c src/SNP_calling.config -profile docker --fasta "data/fasta/DBG2OLC-output2.fasta" --fastq "data/fastq/*_{1,2}.fastq.gz" -resume -w ~/data/work/
+
-- 
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