From 7a4d983c108f0d4e3e59ff49ba390b86b1897329 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Mar 2019 15:35:54 +0100
Subject: [PATCH] gatk: add singularity files

---
 src/singularity_modules/gatk/4.0.8.1/build.sh |  3 +++
 src/singularity_modules/gatk/4.0.8.1/gatk.def | 16 ++++++++++++++++
 2 files changed, 19 insertions(+)
 create mode 100755 src/singularity_modules/gatk/4.0.8.1/build.sh
 create mode 100644 src/singularity_modules/gatk/4.0.8.1/gatk.def

diff --git a/src/singularity_modules/gatk/4.0.8.1/build.sh b/src/singularity_modules/gatk/4.0.8.1/build.sh
new file mode 100755
index 0000000..0ebc054
--- /dev/null
+++ b/src/singularity_modules/gatk/4.0.8.1/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/gatk:4.0.8.1.sif src/singularity_modules/gatk/4.0.8.1/gatk.def
+singularity sign bin/gatk:4.0.8.1.sif
diff --git a/src/singularity_modules/gatk/4.0.8.1/gatk.def b/src/singularity_modules/gatk/4.0.8.1/gatk.def
new file mode 100644
index 0000000..b13ef7f
--- /dev/null
+++ b/src/singularity_modules/gatk/4.0.8.1/gatk.def
@@ -0,0 +1,16 @@
+Bootstrap: docker
+From: broadinstitute/gatk:4.0.8.1
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+
+GATK_VERSION=4.0.8.1
+cp gatk/gatk /usr/bin/
+
+%environment
+export GATK_VERSION=4.0.8.1
+
+%runscript
+exec /bin/bash "$@"
-- 
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