diff --git a/src/singularity_modules/gatk/4.0.8.1/build.sh b/src/singularity_modules/gatk/4.0.8.1/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..0ebc054cb03f7c2fd40e0c16431ef5ae00250819 --- /dev/null +++ b/src/singularity_modules/gatk/4.0.8.1/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/gatk:4.0.8.1.sif src/singularity_modules/gatk/4.0.8.1/gatk.def +singularity sign bin/gatk:4.0.8.1.sif diff --git a/src/singularity_modules/gatk/4.0.8.1/gatk.def b/src/singularity_modules/gatk/4.0.8.1/gatk.def new file mode 100644 index 0000000000000000000000000000000000000000..b13ef7ff00eda69d703aefa85b7bd0ecfd606cfd --- /dev/null +++ b/src/singularity_modules/gatk/4.0.8.1/gatk.def @@ -0,0 +1,16 @@ +Bootstrap: docker +From: broadinstitute/gatk:4.0.8.1 + +%labels +MAINTAINER Laurent Modolo + +%post + +GATK_VERSION=4.0.8.1 +cp gatk/gatk /usr/bin/ + +%environment +export GATK_VERSION=4.0.8.1 + +%runscript +exec /bin/bash "$@"