From 700c50ef28fdb81b1e2af2fdd066f24f76bbdc0c Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Mon, 17 Sep 2018 16:51:36 +0200
Subject: [PATCH] GATK: add docker files

---
 src/docker_modules/GATK/4.0.8.1/Dockerfile     | 6 ++++++
 src/docker_modules/GATK/4.0.8.1/docker_init.sh | 2 ++
 2 files changed, 8 insertions(+)
 create mode 100644 src/docker_modules/GATK/4.0.8.1/Dockerfile
 create mode 100755 src/docker_modules/GATK/4.0.8.1/docker_init.sh

diff --git a/src/docker_modules/GATK/4.0.8.1/Dockerfile b/src/docker_modules/GATK/4.0.8.1/Dockerfile
new file mode 100644
index 0000000..aceded3
--- /dev/null
+++ b/src/docker_modules/GATK/4.0.8.1/Dockerfile
@@ -0,0 +1,6 @@
+FROM broadinstitute/gatk:4.0.8.1
+MAINTAINER Laurent Modolo
+
+ENV GATK_VERSION=4.0.8.1
+
+RUN cp gatk /usr/bin/
diff --git a/src/docker_modules/GATK/4.0.8.1/docker_init.sh b/src/docker_modules/GATK/4.0.8.1/docker_init.sh
new file mode 100755
index 0000000..34c4977
--- /dev/null
+++ b/src/docker_modules/GATK/4.0.8.1/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/docker_modules/GATK/4.0.8.1 -t 'gatk:4.0.8.1'
-- 
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