From 6ff0f7e258472050da53cc9429de3470edba64fb Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 22 Aug 2018 15:28:28 +0200
Subject: [PATCH] SAMtools: fix SGE config
---
src/nf_modules/SAMtools/samtools.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/SAMtools/samtools.config b/src/nf_modules/SAMtools/samtools.config
index a10e3e5..001a77a 100644
--- a/src/nf_modules/SAMtools/samtools.config
+++ b/src/nf_modules/SAMtools/samtools.config
@@ -19,7 +19,7 @@ profiles {
}
sge {
process{
- $trimming {
+ $sort_bam {
beforeScript = "module purge; module load SAMtools/1.7"
}
$index_bam {
--
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