From 6fb743f544cf717c58b860c6a3228f61084b60be Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 5 Feb 2019 10:10:17 +0100
Subject: [PATCH] UCSC: add Dockerfile
---
src/docker_modules/ucsc/375/Dockerfile | 18 +++++++++++-------
1 file changed, 11 insertions(+), 7 deletions(-)
diff --git a/src/docker_modules/ucsc/375/Dockerfile b/src/docker_modules/ucsc/375/Dockerfile
index 0e30931..7d0b2f0 100644
--- a/src/docker_modules/ucsc/375/Dockerfile
+++ b/src/docker_modules/ucsc/375/Dockerfile
@@ -1,12 +1,16 @@
-FROM alpine:3.8
+FROM debian:jessie
MAINTAINER Laurent Modolo
-ENV UCSC_VERSION=375
-ENV PACKAGES rsync \
- bash
+ENV PACKAGES apt-utils \
+ curl \
+ build-essential
-RUN apk update && \
- apk add ${PACKAGES}
+RUN apt-get update && \
+ apt-get install -y ${PACKAGES}
-RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/ /usr/bin/
+ENV UCSC_VERSION=375
+RUN curl -k -L http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v${UCSC_VERSION}.src.tgz -o userApps.v${UCSC_VERSION}.src.tgz &&\
+tar xvf userApps.v${UCSC_VERSION}.src.tgz &&\
+cd userApps/ && \
+make
--
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