From 666d47e1ab883a629ac526e2348dcb6b2794a118 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Mon, 27 Aug 2018 11:24:45 +0200
Subject: [PATCH] MUISC: .config: update config to match last single nf
---
.../MUSIC/peak_calling_paired.config | 30 +++++++++++++++++++
.../MUSIC/peak_calling_single.config | 12 --------
2 files changed, 30 insertions(+), 12 deletions(-)
create mode 100644 src/nf_modules/MUSIC/peak_calling_paired.config
diff --git a/src/nf_modules/MUSIC/peak_calling_paired.config b/src/nf_modules/MUSIC/peak_calling_paired.config
new file mode 100644
index 0000000..4685752
--- /dev/null
+++ b/src/nf_modules/MUSIC/peak_calling_paired.config
@@ -0,0 +1,30 @@
+profiles {
+ docker {
+ docker.temp = 'auto'
+ docker.enabled = true
+ process {
+ $compute_mappability {
+ container = "music:6613c53"
+ }
+ $music_preprocessing {
+ container = "music:6613c53"
+ }
+ $music_computation {
+ container = "music:6613c53"
+ }
+ }
+ }
+ sge {
+ process{
+ $compute_mappability {
+ beforeScript = "module purge; module load MUSIC/6613c53"
+ }
+ $music_preprocessing {
+ beforeScript = "module purge; module load MUSIC/6613c53"
+ }
+ $music_computation {
+ beforeScript = "module purge; module load MUSIC/6613c53"
+ }
+ }
+ }
+}
diff --git a/src/nf_modules/MUSIC/peak_calling_single.config b/src/nf_modules/MUSIC/peak_calling_single.config
index 7c53891..4685752 100644
--- a/src/nf_modules/MUSIC/peak_calling_single.config
+++ b/src/nf_modules/MUSIC/peak_calling_single.config
@@ -9,12 +9,6 @@ profiles {
$music_preprocessing {
container = "music:6613c53"
}
- $music_sort {
- container = "music:6613c53"
- }
- $music_dedup {
- container = "music:6613c53"
- }
$music_computation {
container = "music:6613c53"
}
@@ -28,12 +22,6 @@ profiles {
$music_preprocessing {
beforeScript = "module purge; module load MUSIC/6613c53"
}
- $music_sort {
- beforeScript = "module purge; module load MUSIC/6613c53"
- }
- $music_dedup {
- beforeScript = "module purge; module load MUSIC/6613c53"
- }
$music_computation {
beforeScript = "module purge; module load MUSIC/6613c53"
}
--
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