diff --git a/src/nf_modules/BEDtools/tests.sh b/src/nf_modules/BEDtools/tests.sh
index 4d6bda0d6af5a39af1773b27f53018e509e18bf4..632ba5bff13f65685e3ff521f4a1496b337b55d9 100755
--- a/src/nf_modules/BEDtools/tests.sh
+++ b/src/nf_modules/BEDtools/tests.sh
@@ -1,4 +1,4 @@
-nextflow src/nf_modules/BEDtools/fasta_from_bed.nf \
+./nextflow src/nf_modules/BEDtools/fasta_from_bed.nf \
   -c src/nf_modules/BEDtools/fasta_from_bed.config \
   -profile docker \
   --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \
diff --git a/src/nf_modules/FastQC/tests.sh b/src/nf_modules/FastQC/tests.sh
index b103ac74f468c5b65c398b784b9e66a0e7d669d4..de58b1028e221f05b7d084a7df6df5e8a077c4ec 100755
--- a/src/nf_modules/FastQC/tests.sh
+++ b/src/nf_modules/FastQC/tests.sh
@@ -1,9 +1,9 @@
-nextflow src/nf_modules/FastQC/fastqc_paired.nf \
+./nextflow src/nf_modules/FastQC/fastqc_paired.nf \
   -c src/nf_modules/FastQC/fastqc_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/FastQC/fastqc_single.nf \
+./nextflow src/nf_modules/FastQC/fastqc_single.nf \
   -c src/nf_modules/FastQC/fastqc_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_S.fastq"
diff --git a/src/nf_modules/HTSeq/tests.sh b/src/nf_modules/HTSeq/tests.sh
index f7255c2384d1b84e1f301c9494834954f8daa621..4a2b5ceb62651dc0178fd026f29cd4310ecab29b 100755
--- a/src/nf_modules/HTSeq/tests.sh
+++ b/src/nf_modules/HTSeq/tests.sh
@@ -1,4 +1,4 @@
-nextflow src/nf_modules/HTSeq/htseq.nf \
+./nextflow src/nf_modules/HTSeq/htseq.nf \
   -c src/nf_modules/HTSeq/htseq.config \
   -profile docker \
   --gtf "data/tiny_dataset/annot/tiny.gff" \
diff --git a/src/nf_modules/MultiQC/tests.sh b/src/nf_modules/MultiQC/tests.sh
index 40b6522e2eb0f8abf2f6ea0be4b0903960beedcf..0e38a8e9e9710ec9e0d43a15432c8c8e96c0dfe0 100755
--- a/src/nf_modules/MultiQC/tests.sh
+++ b/src/nf_modules/MultiQC/tests.sh
@@ -1,9 +1,9 @@
-nextflow src/nf_modules/MultiQC/multiqc_paired.nf \
+./nextflow src/nf_modules/MultiQC/multiqc_paired.nf \
   -c src/nf_modules/MultiQC/multiqc_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/MultiQC/multiqc_single.nf \
+./nextflow src/nf_modules/MultiQC/multiqc_single.nf \
   -c src/nf_modules/MultiQC/multiqc_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_S.fastq"
diff --git a/src/nf_modules/RSEM/tests.sh b/src/nf_modules/RSEM/tests.sh
index c57c8c4feff12d566cb2529651c23e90e7bbb919..7d56b790607b7cc1128262f6439cb2b4d3d012ef 100755
--- a/src/nf_modules/RSEM/tests.sh
+++ b/src/nf_modules/RSEM/tests.sh
@@ -1,16 +1,16 @@
-nextflow src/nf_modules/RSEM/indexing.nf \
+./nextflow src/nf_modules/RSEM/indexing.nf \
   -c src/nf_modules/RSEM/indexing.config \
   -profile docker \
   --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \
   --annotation "data/tiny_dataset/annot/tiny.gff"
 
-nextflow src/nf_modules/RSEM/quantification_single.nf \
+./nextflow src/nf_modules/RSEM/quantification_single.nf \
   -c src/nf_modules/RSEM/quantification_single.config \
   -profile docker \
   --index "results/mapping/index/tiny_v2.index*" \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
 
-nextflow src/nf_modules/RSEM/quantification_paired.nf \
+./nextflow src/nf_modules/RSEM/quantification_paired.nf \
   -c src/nf_modules/RSEM/quantification_paired.config \
   -profile docker \
   --index "results/mapping/index/tiny_v2.index*" \
diff --git a/src/nf_modules/SAMtools/tests.sh b/src/nf_modules/SAMtools/tests.sh
index 99a7ff3251ee4b7fdc5ef9567c81d128843e28c7..9b7ac5e47388ea99ecf137ddd6add0b2ad313149 100755
--- a/src/nf_modules/SAMtools/tests.sh
+++ b/src/nf_modules/SAMtools/tests.sh
@@ -1,19 +1,19 @@
-nextflow src/nf_modules/SAMtools/sort_bams.nf \
+./nextflow src/nf_modules/SAMtools/sort_bams.nf \
   -c src/nf_modules/SAMtools/sort_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam"
 
-nextflow src/nf_modules/SAMtools/index_bams.nf \
+./nextflow src/nf_modules/SAMtools/index_bams.nf \
   -c src/nf_modules/SAMtools/index_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.sort.bam"
 
-nextflow src/nf_modules/SAMtools/split_bams.nf \
+./nextflow src/nf_modules/SAMtools/split_bams.nf \
   -c src/nf_modules/SAMtools/split_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam"
 
-nextflow src/nf_modules/SAMtools/filter_bams.nf \
+./nextflow src/nf_modules/SAMtools/filter_bams.nf \
   -c src/nf_modules/SAMtools/filter_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam" \
diff --git a/src/nf_modules/SRAtoolkit/tests.sh b/src/nf_modules/SRAtoolkit/tests.sh
index 526cc7c2cd2144f3d9c26dfcae0e01508cf87a13..d8575eb43181382f580699f5afd73f0ed69b9a2c 100755
--- a/src/nf_modules/SRAtoolkit/tests.sh
+++ b/src/nf_modules/SRAtoolkit/tests.sh
@@ -1,4 +1,4 @@
-nextflow src/nf_modules/SRAtoolkit/fastqdump.nf \
+./nextflow src/nf_modules/SRAtoolkit/fastqdump.nf \
   -c src/nf_modules/SRAtoolkit/fastqdump.config \
   -profile docker \
   --list_srr "src/nf_modules/SRAtoolkit/list-srr.txt"
diff --git a/src/nf_modules/UrQt/tests.sh b/src/nf_modules/UrQt/tests.sh
index 436e9cbda84884edbe7d03bff3a2779c56a6595c..96f5845311afe29a8d5043bf7556b3d4331b045b 100755
--- a/src/nf_modules/UrQt/tests.sh
+++ b/src/nf_modules/UrQt/tests.sh
@@ -1,9 +1,9 @@
-nextflow src/nf_modules/UrQt/trimming_paired.nf \
+./nextflow src/nf_modules/UrQt/trimming_paired.nf \
   -c src/nf_modules/UrQt/trimming_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/UrQt/trimming_single.nf \
+./nextflow src/nf_modules/UrQt/trimming_single.nf \
   -c src/nf_modules/UrQt/trimming_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
diff --git a/src/nf_modules/cutadapt/tests.sh b/src/nf_modules/cutadapt/tests.sh
index cf2b529ea9b4a3f4f81c0d5b5ccbfaa403a40dda..75089624c4c790df6f4153b2b52048dbfd2d61ad 100755
--- a/src/nf_modules/cutadapt/tests.sh
+++ b/src/nf_modules/cutadapt/tests.sh
@@ -1,19 +1,19 @@
-nextflow src/nf_modules/cutadapt/adaptor_removal_paired.nf \
+./nextflow src/nf_modules/cutadapt/adaptor_removal_paired.nf \
   -c src/nf_modules/cutadapt/adaptor_removal_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/cutadapt/adaptor_removal_single.nf \
+./nextflow src/nf_modules/cutadapt/adaptor_removal_single.nf \
   -c src/nf_modules/cutadapt/adaptor_removal_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
 
-nextflow src/nf_modules/cutadapt/trimming_paired.nf \
+./nextflow src/nf_modules/cutadapt/trimming_paired.nf \
   -c src/nf_modules/cutadapt/trimming_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/cutadapt/trimming_single.nf \
+./nextflow src/nf_modules/cutadapt/trimming_single.nf \
   -c src/nf_modules/cutadapt/trimming_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"