diff --git a/src/docker_modules/BWA/0.7.17/Dockerfile b/src/docker_modules/BWA/0.7.17/Dockerfile index b218ba08062e1dd61a5690c41e622952089fe424..7a538498bc4a1489f31fe2692224c02203042c44 100644 --- a/src/docker_modules/BWA/0.7.17/Dockerfile +++ b/src/docker_modules/BWA/0.7.17/Dockerfile @@ -1,7 +1,9 @@ -FROM ubuntu:18.04 +FROM sambamba:0.6.7 MAINTAINER Laurent Modolo ENV BWA_VERSION=0.7.17 +ENV SAMBLASTER_VERSION=0.1.24 + ENV PACKAGES curl=7.58.0* \ ca-certificates=20180409 \ build-essential=12.4* \ @@ -18,3 +20,11 @@ make && \ cp bwa /usr/bin && \ cd .. && \ rm -R bwa-${BWA_VERSION}/ + +RUN curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \ +tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \ +cd samblaster-v.${SAMBLASTER_VERSION}/ && \ +make && \ +cp samblaster /usr/bin && \ +cd .. && \ +rm -R samblaster-v.${SAMBLASTER_VERSION}/