From 3bc9cac1766d6bbe31b1e8509f60a5078c6c5484 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Thu, 4 Oct 2018 10:00:00 +0200
Subject: [PATCH] Bioawk: add docker files
---
src/docker_modules/bioawk/1.0/Dockerfile | 21 ++++++++++++++++++++
src/docker_modules/bioawk/1.0/docker_init.sh | 2 ++
2 files changed, 23 insertions(+)
create mode 100644 src/docker_modules/bioawk/1.0/Dockerfile
create mode 100755 src/docker_modules/bioawk/1.0/docker_init.sh
diff --git a/src/docker_modules/bioawk/1.0/Dockerfile b/src/docker_modules/bioawk/1.0/Dockerfile
new file mode 100644
index 0000000..f7ca980
--- /dev/null
+++ b/src/docker_modules/bioawk/1.0/Dockerfile
@@ -0,0 +1,21 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV BIOAWK_VERSION=1.0
+ENV PACKAGES git=1:2.17* \
+ build-essential=12.4* \
+ ca-certificates=20180409 \
+ zlib1g-dev=1:1.2.11* \
+ byacc
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
+
+RUN git clone https://github.com/lh3/bioawk.git && \
+ cd bioawk && \
+ git checkout tags/v${BIOAWK_VERSION} && \
+ make && \
+ cd .. && \
+ mv bioawk/bioawk /usr/bin/ && \
+ rm -Rf bioawk
diff --git a/src/docker_modules/bioawk/1.0/docker_init.sh b/src/docker_modules/bioawk/1.0/docker_init.sh
new file mode 100755
index 0000000..23c1633
--- /dev/null
+++ b/src/docker_modules/bioawk/1.0/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/docker_modules/bioawk/1.0 -t 'bioawk:1.0'
--
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