From 3bbe96f698bcf3b0aa59cf493803507e0b5d6f8d Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Wed, 29 Aug 2018 10:50:08 +0200
Subject: [PATCH] MUSIC: change read size param
---
src/nf_modules/MUSIC/peak_calling_single.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/MUSIC/peak_calling_single.nf b/src/nf_modules/MUSIC/peak_calling_single.nf
index da16eb9..be28039 100644
--- a/src/nf_modules/MUSIC/peak_calling_single.nf
+++ b/src/nf_modules/MUSIC/peak_calling_single.nf
@@ -1,4 +1,4 @@
-params.reads_size = 100
+params.read_size = 100
params.frag_size = 200
params.step_l = 50
params.min_l = 200
@@ -35,7 +35,7 @@ process compute_mappability {
script:
"""
-generate_multimappability_signal.csh ${fasta} ${params.reads_size} ./
+generate_multimappability_signal.csh ${fasta} ${params.read_size} ./
bash temp_map_reads.csh
bash temp_process_mapping.csh
"""
@@ -98,7 +98,7 @@ MUSIC -get_per_win_p_vals_vs_FC -chip chip/ -control control/ \
-l_win_min ${params.min_l} -l_win_max ${params.max_l}
MUSIC -get_multiscale_punctate_ERs \
-chip chip/ -control control/ -mapp mappability/ \
- -l_mapp ${params.reads_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0
+ -l_mapp ${params.read_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0
ls -l
"""
}
--
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