diff --git a/src/nf_modules/MUSIC/peak_calling_single.nf b/src/nf_modules/MUSIC/peak_calling_single.nf index da16eb95a4bdfed3815048f032187123acd8a8f9..be280394b80e6ddd9644da85f62e8d2be5d843ed 100644 --- a/src/nf_modules/MUSIC/peak_calling_single.nf +++ b/src/nf_modules/MUSIC/peak_calling_single.nf @@ -1,4 +1,4 @@ -params.reads_size = 100 +params.read_size = 100 params.frag_size = 200 params.step_l = 50 params.min_l = 200 @@ -35,7 +35,7 @@ process compute_mappability { script: """ -generate_multimappability_signal.csh ${fasta} ${params.reads_size} ./ +generate_multimappability_signal.csh ${fasta} ${params.read_size} ./ bash temp_map_reads.csh bash temp_process_mapping.csh """ @@ -98,7 +98,7 @@ MUSIC -get_per_win_p_vals_vs_FC -chip chip/ -control control/ \ -l_win_min ${params.min_l} -l_win_max ${params.max_l} MUSIC -get_multiscale_punctate_ERs \ -chip chip/ -control control/ -mapp mappability/ \ - -l_mapp ${params.reads_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0 + -l_mapp ${params.read_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0 ls -l """ }