From 259e4d5b7bbfa0cd9cbc99827cf725b8918948a1 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Mar 2019 11:56:58 +0100
Subject: [PATCH] bioawk: add singularity files
---
src/singularity_modules/bioawk/1.0/bioawk.def | 31 +++++++++++++++++++
src/singularity_modules/bioawk/1.0/build.sh | 3 ++
2 files changed, 34 insertions(+)
create mode 100644 src/singularity_modules/bioawk/1.0/bioawk.def
create mode 100755 src/singularity_modules/bioawk/1.0/build.sh
diff --git a/src/singularity_modules/bioawk/1.0/bioawk.def b/src/singularity_modules/bioawk/1.0/bioawk.def
new file mode 100644
index 0000000..a5678b6
--- /dev/null
+++ b/src/singularity_modules/bioawk/1.0/bioawk.def
@@ -0,0 +1,31 @@
+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+BIOAWK_VERSION=1.0
+PACKAGES="git \
+ build-essential \
+ ca-certificates \
+ zlib1g-dev \
+ byacc"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+git clone https://github.com/lh3/bioawk.git && \
+ cd bioawk && \
+ git checkout tags/v${BIOAWK_VERSION} && \
+ make && \
+ cd .. && \
+ mv bioawk/bioawk /usr/bin/ && \
+ rm -Rf bioawk
+
+%environment
+export BIOAWK_VERSION=1.0
+
+%runscript
+exec /bin/bash "$@"
diff --git a/src/singularity_modules/bioawk/1.0/build.sh b/src/singularity_modules/bioawk/1.0/build.sh
new file mode 100755
index 0000000..6affbc2
--- /dev/null
+++ b/src/singularity_modules/bioawk/1.0/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/bioawk:1.0.sif src/singularity_modules/bioawk/1.0/bioawk.def
+singularity sign bin/bioawk:1.0.sif
--
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